PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g03870
Common NameGSCOC_T00024928001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 263aa    MW: 29319.3 Da    PI: 8.0691
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g03870genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-183984147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd++l ++v+++G ++W++I++++  gR++k+c++rw + 
      Cc10_g03870 39 KGPWSAEEDKILTRLVEKYGARNWSLISNYIK-GRSGKSCRLRWCNQ 84
                     79*****************************9.***********985 PP
2Myb_DNA-binding582.1e-1893135347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++eEd+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
      Cc10_g03870  93 PFSPEEDDTILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 135
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0633489IPR017930Myb domain
SuperFamilySSF466891.49E-3237132IPR009057Homeodomain-like
SMARTSM007171.1E-163887IPR001005SANT/Myb domain
PfamPF002493.5E-183984IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-254092IPR009057Homeodomain-like
CDDcd001671.35E-154183No hitNo description
SMARTSM007171.6E-1690138IPR001005SANT/Myb domain
PROSITE profilePS5129421.63591140IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-2493139IPR009057Homeodomain-like
CDDcd001673.74E-1393136No hitNo description
PfamPF002491.0E-1593135IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDSFYRCSSA TSSSSDSSSS DSSLSGKTPR DASRSERIKG PWSAEEDKIL TRLVEKYGAR  60
NWSLISNYIK GRSGKSCRLR WCNQLSPSVE HRPFSPEEDD TILAAHAKYG NRWATIARLL  120
PGRTDNAVKN HWNSTLKRRY QQQKETNHQQ QQENQMTEAM DIAADVKNEF SGFVPFSESN  180
NINITATSTS RVNSRVVPFT DYDESDPMTT LSLAPPGMYR GPGLGAEENL PAGFWDAMRN  240
VIAREVREYV ASSFSATSPG FH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-41361391104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092410.10.0transcription factor MYB44-like
TrEMBLA0A068UH830.0A0A068UH83_COFCA; Uncharacterized protein
STRINGXP_009780273.12e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-58myb domain protein 77