PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g03110

Common Name

GSCOC_T00024832001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 538aa MW: 55780.7 Da PI: 9.0819

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g03110	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cc10_g03110 58 FVCEICNKGFQRDQNLQLHRRGH 80 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	57	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.15E-6	57	80	No hit	No description
Pfam	PF12874	0.0022	58	80	No hit	No description
PROSITE profile	PS50157	10.949	58	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	58	80	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	99	129	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.15E-6	129	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MATAPSASEE ASVSSAGNPM IAAQVGPVKK KRNLPGMPDP DAEVIALSPK TLLATNRFVC 60 EICNKGFQRD QNLQLHRRGH NLPWKLRQRN GKEVKKRVYV CPEATCIHHD PSRALGDLTG 120 IKKHFCRKHG EKKWKCERCS KKYAVISDWK AHTKTCGTRE YRCDCGTLFS RRDSFITHRA 180 FCDALAQESA RSQTQTLAIT NEEGTLKVQA QTTTTRTSSS SPPPPPLTPS TGVLSPVLSI 240 HSSEMPENLI GRSQPQPGTP QLSATSTTSA AAATAGNSSD ANVSSTTGVF ASILGASGSA 300 GLSRSSQSPS SFSGLLCAMG GPGRSAVEPI SLSLSSSLYL SNHPSTLFPS TPQDHHPRHY 360 STNPQPALSA TALLQKAAQI GAASSGSSFL RGLGLAMPSS SDLQDNCASP SPATAPATAS 420 ASASTANWMM SHVKPENGSV APGQLGLGLA SDHAASGLTD LMMGPPTIFG GKPTTLDFLG 480 LGMAPGAPSS DGISAYLSSM RGGGLDVAAV AATSTFGGIN LGGSGWDDSS DRKPTLL*

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MATAPSASEE ASVSSAGNPM IAAQVGPVKK KRNLPGMPDP DAEVIALSPK TLLATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRN GKEVKKRVYV CPEATCIHHD PSRALGDLTG  120
IKKHFCRKHG EKKWKCERCS KKYAVISDWK AHTKTCGTRE YRCDCGTLFS RRDSFITHRA  180
FCDALAQESA RSQTQTLAIT NEEGTLKVQA QTTTTRTSSS SPPPPPLTPS TGVLSPVLSI  240
HSSEMPENLI GRSQPQPGTP QLSATSTTSA AAATAGNSSD ANVSSTTGVF ASILGASGSA  300
GLSRSSQSPS SFSGLLCAMG GPGRSAVEPI SLSLSSSLYL SNHPSTLFPS TPQDHHPRHY  360
STNPQPALSA TALLQKAAQI GAASSGSSFL RGLGLAMPSS SDLQDNCASP SPATAPATAS  420
ASASTANWMM SHVKPENGSV APGQLGLGLA SDHAASGLTD LMMGPPTIFG GKPTTLDFLG  480
LGMAPGAPSS DGISAYLSSM RGGGLDVAAV AATSTFGGIN LGGSGWDDSS DRKPTLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	130	191	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-33	130	191	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027091744.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9LVQ7	1e-144	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A068UGC6	0.0	A0A068UGC6_COFCA; Uncharacterized protein
STRING	VIT_18s0001g12220.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-113	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]