PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g02140
Common NameGSCOC_T00024711001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family DBB
Protein Properties Length: 317aa    MW: 34153.3 Da    PI: 6.9667
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g02140genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.87.8e-07445539
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                  C+ +++ e++ fC  ++  lC++C    H+        H++
  Cc10_g02140  4 QCDVCDKGEASVFCVADEAALCNTCDHRVHHAnklaskhHRF 45
                 7******88********************6445888886666 PP
2zf-B_box26.31.5e-085492238
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                 +++ C+ ++e ++ lfC++++  lC++C   +Hk   Ht
  Cc10_g02140 54 QAPLCDICQERRAFLFCQQDRAILCRECDIPIHKAneHT 92
                 7899*****************************878865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.495147IPR000315B-box-type zinc finger
CDDcd000212.09E-6347No hitNo description
SMARTSM003365.0E-6447IPR000315B-box-type zinc finger
PROSITE profilePS5011910.13953100IPR000315B-box-type zinc finger
SMARTSM003364.5E-1453100IPR000315B-box-type zinc finger
PfamPF006434.2E-75492IPR000315B-box-type zinc finger
CDDcd000211.46E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKIQCDVCDK GEASVFCVAD EAALCNTCDH RVHHANKLAS KHHRFSLLQP PPKQAPLCDI  60
CQERRAFLFC QQDRAILCRE CDIPIHKANE HTEKHNRFLL TGVKLSANSA LYAPSEAAAA  120
ISASTSLTNV SDAVPTFNPQ STVINKPKGT TTTTTTAMNG QTMNGLDTNN SSTPTSSIAE  180
YLIEMLPGWH VEDFLDSSSP FGFCKSTGDG EMIPFWDEGL HSDLSSFLPG NTGLWVPQAA  240
PVPLHAHPTT QPQSFSTSSA SNVGFGFGFG GHIGSKDMIS NIKSSRKRND DNSFAVPQIS  300
PPSSASSKRL KTTTLW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285310RKRNDDNSFAVPQISPPSSASSKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090991.10.0B-box zinc finger protein 20-like
TrEMBLA0A068UGV20.0A0A068UGV2_COFCA; Uncharacterized protein
STRINGSolyc12g089240.1.11e-113(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-73salt tolerance homolog2