PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g01330 | ||||||||
Common Name | GSCOC_T00024604001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bZIP | ||||||||
Protein Properties | Length: 195aa MW: 21875.2 Da PI: 9.2663 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.2 | 3.7e-13 | 141 | 187 | 4 | 49 |
XCHHHCHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKka.eieeLeekvkeLeaeNkaLkkel 49 r +r++kNRe+A rsR+RK++ ++ eLe kv+ L +eN +L+ + Cc10_g01330 141 CHRNKRMIKNRESAARSRARKQQaYTSELEIKVARLMEENARLRRQQ 187 5799*****************7549******************9654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0029 | 136 | 190 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.5E-10 | 140 | 189 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 6.70E-20 | 142 | 189 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-10 | 143 | 188 | No hit | No description |
SuperFamily | SSF57959 | 1.5E-7 | 143 | 189 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 145 | 160 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEEVWKDICP SALLHQPTST SSSAAALEGI VFQEFLSRPS RAQYDSTSRH RHHHHHHHHP 60 GRQSSLESID RGSFGSHSQG QPAPAATASI TLSLNSTRPP PSSSFSLPLD HDLDADANLN 120 PPTVEFSILP EKRASQDEDT CHRNKRMIKN RESAARSRAR KQQAYTSELE IKVARLMEEN 180 ARLRRQQQEK VKHI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 162 | ARSRARKQQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ308802 | 1e-146 | AJ308802.1 Coffea arabica microsatellite DNA, clone 73-5CTG. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027089733.1 | 1e-119 | protein FD-like isoform X1 | ||||
Refseq | XP_027089734.1 | 1e-119 | protein FD-like isoform X1 | ||||
TrEMBL | A0A068UIA5 | 1e-140 | A0A068UIA5_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3572 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17770.2 | 2e-10 | basic region/leucine zipper motif 27 |