PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc09_g10150

Common Name

GSCOC_T00041083001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bZIP

Protein Properties

Length: 274aa MW: 29681 Da PI: 7.0573

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc09_g10150	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.1	2.2e-09	88	135	4	51
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+ + Le++v L a N++L k+l+ Cc09_g10150 88 KKSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLMKRLQG 135 577899999**********************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.9E-14	81	153	No hit	No description
SMART	SM00338	1.2E-10	85	152	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.0E-13	86	135	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.197	87	134	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-7	89	134	No hit	No description
CDD	cd14686	1.87E-12	91	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MDDGELEFSN HEMFSNSSFG DLPSSCSMGS FLDEILKDTH ACTHTHTCNP PGPDNSHTHT 60 CYHVHTKIVP APSEDKTPTD DTAESTEKKS KKRPLGNREA VRKYREKKKA RAASLEDEVV 120 RLRALNQQLM KRLQGQAVLE AEIARLKCLL VDIRGRIEGE IGSFPYQKSA NKSGDAYLAN 180 HNLPAAYVMN PCNVRCDDQL YCLHPGSEGR SAEAATLNGQ GFNDCEFENL HCSGNQNSGL 240 KELPGCGMGN GVPSTNTSNG NKKKGVARSG TGG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087416.1	0.0	basic leucine zipper 23-like
Swissprot	Q8GTS2	1e-112	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A068V3V1	0.0	A0A068V3V1_COFCA; Uncharacterized protein
STRING	XP_009797256.1	1e-151	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2989	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-101	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]