PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g09190
Common NameGSCOC_T00023086001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 305aa    MW: 34327.5 Da    PI: 7.062
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g09190genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.66.1e-34165222259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp +v++tYeg+Hnh+
  Cc09_g09190 165 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSFQDPAIVITTYEGTHNHH 222
                  8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-35149224IPR003657WRKY domain
SuperFamilySSF1182909.68E-30156224IPR003657WRKY domain
PROSITE profilePS5081132.397159224IPR003657WRKY domain
SMARTSM007743.1E-39164223IPR003657WRKY domain
PfamPF031061.4E-26165222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSEDFRDLYY HQPYQDGRHG SINMILNSSH MLDPSYMSFT DCLLEGSSDQ GTFARGFGLS  60
PSSSEAFSLV KDEQKPVVIE AAGDHQACAS HETPVTPNSS ISSSSTEAVG DEDSNKGKKD  120
KQLKETQEED ALSPKKENKP KKKGEKKERQ PRFAFMTKSE VDHLEDGYRW RKYGQKAVKN  180
SPYPRSYYRC TTQKCPVKKR VERSFQDPAI VITTYEGTHN HHVPATLRGN VAGMLPPSML  240
TPMPLGVPNF PQELIVQMPQ FYSQASANTS SMYQQNLTPL QQLQFHDYGL LQDIVPSMFF  300
KQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-29154225778Probable WRKY transcription factor 4
2lex_A2e-29154225778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027088028.10.0WRKY transcription factor 28-like
RefseqXP_027185582.10.0WRKY transcription factor 28-like
SwissprotQ8VWJ27e-69WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A068UDG70.0A0A068UDG7_COFCA; Uncharacterized protein
STRINGVIT_10s0003g02810.t011e-117(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-64WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]