PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g07330
Common NameGSCOC_T00036275001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 455aa    MW: 50209.8 Da    PI: 5.7477
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g07330genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.4e-31217275259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Cc09_g07330 217 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 275
                  699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.994211277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-30215277IPR003657WRKY domain
SuperFamilySSF1182903.27E-26215277IPR003657WRKY domain
SMARTSM007741.4E-37216276IPR003657WRKY domain
PfamPF031069.7E-26218275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MCSRLLQKME NYQGDLADIL RASGGRSIAS SNISSAEVSV SAPRDWQFPS NQVGIYEEPS  60
LDEFGDPFTN MRDPLLLPDM DHMPASGFYD ASSTDHIITL LTQRILDDHE LSRRPPNNIF  120
TRMLQISPNA KPPSSPRESQ LLVAASPRGL KPPTLVTNDM INTSNNSKVS VIENAPVQIS  180
SPRNTGIKRR KSQAKKVVCI PAPAPANSRP SGEIVPSDLW AWRKYGQKPI KGSPYPRGYY  240
RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPTQR NALAGSTRSQ PTKSGSTSKA  300
TNSSHAQKAT NLKEEEKPET QTDNASSPIV TGSSSTGQVV KEETEMEMEV EGLDKKKEMD  360
NLDQFNEGFP QSYKPGLPDS NHSEDFFADL SELEADPLNL LFTQGYSGDE ERENKNLELF  420
SFYDWTTNNS SMTTTTIMTT TTITSSLEEA KKGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-26192278380Disease resistance protein RRS1
5w3x_D5e-26192278380Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085838.10.0probable WRKY transcription factor 14
TrEMBLA0A068UWC70.0A0A068UWC7_COFCA; Uncharacterized protein
STRINGPOPTR_0001s46490.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.12e-84WRKY DNA-binding protein 14