PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g06700
Common NameGSCOC_T00005124001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 368aa    MW: 40962.9 Da    PI: 9.124
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g06700genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.41.8e-1818102275
     trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                  Wt qe+++Liea+r ++er  +++             ++ +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ + ++
  Cc09_g06700  18 WTVQETMVLIEAKRMDDERRMKRQgdsvggekpggkPAELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRLA-DH 102
                  **************777777664334555556666599*****************************************9974.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9111086IPR017877Myb-like domain
PfamPF138373.1E-121796No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MANQGGNNVL RDYRKGNWTV QETMVLIEAK RMDDERRMKR QGDSVGGEKP GGKPAELRWK  60
WVEDYCWRNG CLRSQNQCND KWDNLMRDFK KVREYERRLA DHQKQLITIG ESSSERERSD  120
EKSYWKLEKN ERKANNLPSN LLPQIYDALV EVVERKVQRG SVVGLVGAGG TTASIPNVPP  180
SSAAALVGQP SSLPPSMQHL PISPPVSALP LPPPVVAQTP VQQQQQQQQH PHTQPFSQQL  240
PTVVNAINYL KLEILSDSDT SEHSDSPAKR RRRGEGTSGG ASGSESHEVG TAISRSASVI  300
AETIQACEER EERRHRELLS LHERRLQIEE SKAEISRQGI NGLVDAVNKL ANSILALASH  360
KTQSTPK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4562557e-35AM456255.2 Vitis vinifera contig VV78X217219.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027086772.10.0uncharacterized protein LOC113708513 isoform X1
RefseqXP_027086774.10.0trihelix transcription factor ASR3-like isoform X2
RefseqXP_027086775.10.0uncharacterized protein LOC113708513 isoform X3
TrEMBLA0A068VA120.0A0A068VA12_COFCA; Uncharacterized protein
STRINGGorai.010G171500.11e-128(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.19e-57Trihelix family protein