PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g05240
Common NameGSCOC_T00007101001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 408aa    MW: 43764.3 Da    PI: 8.0253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g05240genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00173760123
                 EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                 +kC+ C+k  s+   ++ H    H
  Cc09_g05240 37 FKCHVCHKKLSTAGGMQIHVLQvH 60
                 89*****************87655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080812.01867IPR003656Zinc finger, BED-type
SMARTSM00355181336IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801536IPR007087Zinc finger, C2H2
SMARTSM003550.033760IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803960IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGKKKKRAQT SKVWCYYCDR EFEDEKILVQ HQKAKHFKCH VCHKKLSTAG GMQIHVLQVH  60
KENVSKVPNA KPGRESTDIE IYGMQGIPPD ILAAHYGEED DEAPAKTPKV EIPPTQVGGV  120
VQGSLGVGYP PQSSVGVMPT LYNPAVPIPP AGWPVAPRPQ PWYPQHSAVS VPPSAPLGLP  180
PQPLFPVQNL RPPLPPTAPP GLQASVPVVP PGLPAPPPIP VSQPLFPVVP SSNVPAQNSA  240
FSAPMLPTSL PLSTLTETKN SVDGYLNNNA SVTNTFATPG IPAAMPVNSH SYASGPNTGG  300
PSIGPPPVIA NKAPASQPAG NEVYLVWDDE AMSMEERRMS LLKYQVHDET SQVSHNYPVR  360
PTKILSYRCG HELLPYPDGY LVVVQIQLLT HCFLKVLFCT SCPSLSP*
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027086269.10.0protein SUPPRESSOR OF FRI 4 isoform X1
SwissprotQ9C5G01e-138SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A068VBW80.0A0A068VBW8_COFCA; Uncharacterized protein
STRINGXP_009761829.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA599144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]