PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g04710
Common NameGSCOC_T00017392001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 523aa    MW: 55362 Da    PI: 4.3422
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g04710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.44.5e-191563149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k+ien   r+ +fskR+ngi KKA+EL++LC +++ ++ifs+t+k y +
  Cc09_g04710 15 KKIENADDRYASFSKRKNGIYKKASELCTLCSMDIGILIFSPTNKPYSF 63
                 68******************************************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.507767IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-26766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-25879IPR002100Transcription factor, MADS-box
CDDcd002657.96E-31877No hitNo description
PRINTSPR004049.3E-16929IPR002100Transcription factor, MADS-box
PfamPF003194.1E-211663IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MEGKQTRGRR KIEMKKIENA DDRYASFSKR KNGIYKKASE LCTLCSMDIG ILIFSPTNKP  60
YSFFHPTMET VLNRFHKKDQ QPDPTQQLIE AYTRANVDRL NKQLDELDAQ MEIESNRAKH  120
LDQIGAPKDP FAWLPTPIQE MDEEMVAKVE AWVGDMLVQL QNHANELNKG ASSSAAVPQA  180
AGPSASAYVP IQDFGFGTAS SSAGFHPQDY TFGGSSSAFV PRKDFNVGGS SSAFVPPKDF  240
NVGGSSSAFV PPKDFNIGGS SSASVPPKNF NIGGSSSAFV PPKYFNVGGS SSDFVPPKDL  300
NVGGSSSAFF PPKDLNVGGS SSAFVPSNYF NVGGSSSAFV PPEDFNLGAP SSGVAPPEGF  360
NLGAPSSAVA PVADSSFGVS SEDFTFGTSS SAFVSSEDFN LRASSSAAIP PEGYSFEEFY  420
YEAASSLGVA PEDFYSEVSP PFVLPRDDFN YETSSITPME SYNFEAPSII PPPEDFSVGA  480
SSSPIPPPED FTAGASSSPI PPPEDFGAGP SSSPFPPKNS NP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027183791.10.0flocculation protein FLO11-like
TrEMBLA0A068U7230.0A0A068U723_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-27AGAMOUS-like 57