PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g03550
Common NameGSCOC_T00017534001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 404aa    MW: 44164 Da    PI: 8.4236
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g03550genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.8e-124873227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C+++ rtG C+yG++C+F+H+p
  Cc09_g03550 48 GEPDCSYYIRTGLCRYGATCRFNHPP 73
                 6899********************97 PP
2zf-CCCH39.97e-1393118227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++++tGtCk+G++CkF+H++
  Cc09_g03550  93 GQPECQYYLKTGTCKFGATCKFHHPR 118
                  5799********************96 PP
3zf-CCCH36.11.1e-11142164527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  +C +++rtG+Ck+G++CkF+H++
  Cc09_g03550 142 ECAYYLRTGHCKFGSTCKFHHPQ 164
                  7********************97 PP
4zf-CCCH38.81.6e-12265291127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG Ck+G+ CkF+H++
  Cc09_g03550 265 PGQPECQFYMKTGDCKFGAVCKFHHPR 291
                  5789*********************96 PP
5zf-CCCH40.35.3e-13311337127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC f++r+G+Ck+G++CkF H++
  Cc09_g03550 311 PGEPLCIFYSRYGICKFGPSCKFDHPM 337
                  589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2394674IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-64673IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-84873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-45272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.73291119IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-591118IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-1093118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-694120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-597119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328137165IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5137164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6140165IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9142164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4143163IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6264291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502264292IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9266291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5268293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4270292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709310338IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7310337IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10312337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5313337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4315335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDFDSGIPIS RASVVAEGSS SLDQDALWQI NLRSREPMEA GTYPVREGEP DCSYYIRTGL  60
CRYGATCRFN HPPNRKLAIA TARMRGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPREK  120
AGIAGRVTLN ALGYPLRPNE IECAYYLRTG HCKFGSTCKF HHPQPANMMV SVRGSPVYPS  180
VHSPTNPGQL SYPLSRASFI PSPRWQGPSS YAPVLVPQSM VSVSGWNAYS GQLGSGSSAE  240
SQQQTAGNDQ THGMLQRETV FPERPGQPEC QFYMKTGDCK FGAVCKFHHP RERILPAPDC  300
VLSPIGLPLR PGEPLCIFYS RYGICKFGPS CKFDHPMGVF TYNVSSSSTE PPTVRRLLGS  360
SSGTGPLTLA SEGLVEASST KSRLLPLSEA RKPSGDTSID PEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087152.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A068U9F40.0A0A068U9F4_COFCA; Uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1