PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc09_g01520

Common Name

GSCOC_T00017797001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 291aa MW: 32909.3 Da PI: 9.3132

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc09_g01520	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3.1e-33	50	103	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LH++Fv+av++LGG+++AtPk++l++m+vkgLt++hvkSHLQ+YR+ Cc09_g01520 50 PRLRWTQDLHHCFVHAVQRLGGEDRATPKAVLQMMNVKGLTVSHVKSHLQMYRS 103 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-31	46	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.294	46	106	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-16	49	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-25	50	103	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-10	51	102	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MSNSPSFQSL DNSADTDKSS VTILEEKMVE IPSQSSVRSR VRPYVRSKLP RLRWTQDLHH 60 CFVHAVQRLG GEDRATPKAV LQMMNVKGLT VSHVKSHLQM YRSMMQEQTI KEAGVVAGKG 120 NKTQRGIQQP SYFFLHPTGP PQPQYYHYQY KHRLGFGFPN YYMSTPFLYQ NNTPTSITYG 180 TQVYKELLPT GLPNNTWKEM PAAANIEYHR NMFDMQLPLP IFCNDFLRRI DGQAGVNEKN 240 EQVPDEASSS SKKMKKIVEG GCSTIFYKEA PGSSSATKDE NDINLELTLG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	51	103	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	51	103	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	51	103	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	51	103	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	51	103	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	51	103	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	51	103	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	51	103	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	51	103	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	51	103	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	51	103	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	51	103	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027085913.1	0.0	transcription activator GLK1-like
TrEMBL	A0A068U7C8	0.0	A0A068U7C8_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7450	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-25	G2-like family protein