PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g16790
Common NameGSCOC_T00035653001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 438aa    MW: 48379.8 Da    PI: 7.3145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g16790genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12256301454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L
  Cc08_g16790 256 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVAYINEL 301
                  799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-3925176IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.27E-17251316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.825252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.04E-15255306No hitNo description
PfamPF000106.0E-10256301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-17256311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-16258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEDILAAAAS SPASLLCEAT LAAPKQRLQF IMQNQREWWV YSIFWQASRD RDGRLVLSWG  60
DGHFRGPKDC SQRAKSDGFG DGRDVADSEW FYMLSLTRCF VSGEDLLVRT FNSGSYAWLV  120
GDHQLLFYNC ERAKEAHSHG VKTFVCISTS GGILELGSSE LIKEDWGLVQ LCKTLFGSED  180
QNSTSSTSTT TTTGDAILGG QPISTGSAGM AHTGPKLLET QNFMPEAAGK WSKVRSPSSR  240
RRMREASMTG QEMALNHVEA ERQRREKLNH RFYALRSVVP NVSRMDKASL LADAVAYINE  300
LKAKIQELEA RVGVGSRGGA QYHDRKLLVT TATSCGDFIQ ETQSTVTADQ NQSGIHEIHV  360
KFVNGSVAIL HILCPDVNYP SAKLMDALRQ MELQVCSASF SPVQDLMLHD VVIRIPRNDA  420
LATEDALKTA LLRRLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-242517610192Transcription factor MYC3
4rqw_B1e-242517610192Transcription factor MYC3
4rs9_A1e-242517610192Transcription factor MYC3
4yz6_A1e-242517610192Transcription factor MYC3
5gnj_A1e-24250310262Transcription factor MYC2
5gnj_B1e-24250310262Transcription factor MYC2
5gnj_E1e-24250310262Transcription factor MYC2
5gnj_F1e-24250310262Transcription factor MYC2
5gnj_G1e-24250310262Transcription factor MYC2
5gnj_I1e-24250310262Transcription factor MYC2
5gnj_M1e-24250310262Transcription factor MYC2
5gnj_N1e-24250310262Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082694.10.0transcription factor bHLH14-like
TrEMBLA0A068UVG60.0A0A068UVG6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-58bHLH family protein