PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g15910
Common NameGSCOC_T00035535001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 343aa    MW: 38273.4 Da    PI: 6.0436
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g15910genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29132192259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+++eitY+g+H ++
  Cc08_g15910 132 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhmrNCWATKQVQRSDDDPTLFEITYKGTHVCN 192
                  8**************************99999**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.23126189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-28127193IPR003657WRKY domain
SuperFamilySSF1182901.83E-25130193IPR003657WRKY domain
SMARTSM007741.0E-39131193IPR003657WRKY domain
PfamPF031061.8E-26132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEYGSSWDYY TLVNELTQGM EQAKQLRVHL SSGYMEPQDL LLQRILSSYE KALSILKWNG  60
GGSVGQSQPT PLASGAPESS ISVEGSPQNE EAKNNFNDYQ DLRDVSKKRK TQPTWTEQVR  120
VSPENGLEGP ADDGYSWRKY GQKDILGAKY PRSYYRCTYR HMRNCWATKQ VQRSDDDPTL  180
FEITYKGTHV CNTATSISVP QHPSPAKQEF KHSYNHNNHQ QPQQPNQILM NFRANLRVNT  240
GDSEAKEILF PMSALVDENI LGTYSPSFVS PATSGSNYFS MSPCHMANLG RIKNLHSSES  300
DLTEIISATA SATNSPIAGL DFSIDSVELD PNFPFNAPGF FT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-19132191968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109LRDVSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085274.10.0probable WRKY transcription factor 41
RefseqXP_027085591.10.0probable WRKY transcription factor 41
TrEMBLA0A068UUQ40.0A0A068UUQ4_COFCA; Uncharacterized protein
STRINGXP_009768979.11e-139(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-68WRKY family protein