PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g15890
Common NameGSCOC_T00035533001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 206aa    MW: 23105.2 Da    PI: 9.7221
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g15890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.28e-171057249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +ie+ks+rqvtf+kRr+g++KKA+ L+   + e+ ++ fs  g++y +
  Cc08_g15890 10 KIEDKSKRQVTFTKRRQGLFKKASALCNISNYEIGIVTFSLAGNMYAW 57
                 59********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.1161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-18160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-21181IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-13323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-171057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-132338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-133859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVRKKVDIVK IEDKSKRQVT FTKRRQGLFK KASALCNISN YEIGIVTFSL AGNMYAWGHP  60
TVDSVLKRYM AYRAQKPDEN HQENETSPGD DHQNKREVSL ALSLSLPADE KETPKRSDEE  120
KAGQEKGLVL KNNKNNSSNQ EGEKRVEGHA AAAKSKVMAS WNLPKVDDLE IDELERLMAD  180
MEEMKKKVVD RANQMKSSAG RVPSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116ETPKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083940.11e-150agamous-like MADS-box protein AGL29
TrEMBLA0A068UV521e-150A0A068UV52_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-23AGAMOUS-like 61