PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g15270
Common NameGSCOC_T00035454001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 353aa    MW: 38747.1 Da    PI: 6.0082
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g15270genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30160218259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s +dp++++itY+ eHnh+
  Cc08_g15270 160 SDMWAWRKYGQKPIKGSPYPRSYYRCSSSkGCIARKQVEQSCTDPSIFVITYTAEHNHS 218
                  79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-31145220IPR003657WRKY domain
PROSITE profilePS5081132.742154220IPR003657WRKY domain
SuperFamilySSF1182904.71E-26156220IPR003657WRKY domain
SMARTSM007745.7E-35159219IPR003657WRKY domain
PfamPF031064.4E-25161217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MADFGSLEDW GLQAIVRGST GYYCNTSATG SSTEHLTSCY GLLDTPKDEH HGLLLSFPGP  60
FETAAMLTDE LQDLYKPFYT VSHSSPAQNS PVGPTTPSDS VSVCKETKEE PEEVHQQKVK  120
VHGDQPPAAT ATSTYMPKYK RRKNQQKRVV LQSTAKDLSS DMWAWRKYGQ KPIKGSPYPR  180
SYYRCSSSKG CIARKQVEQS CTDPSIFVIT YTAEHNHSQP TRKNALAGTV RHKFSTTKTP  240
TGSNSKAAKK GNSGGCSPNP GLVLSSPEAR LLADEEESQE RNIEREIKDE NDGQIVDVKP  300
DNGVLIPEVM FDDDFFSGIC DWNAFMSELG DGHRLAETVS SESDLLQPII PV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-19151220877Probable WRKY transcription factor 4
2lex_A7e-19151220877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027183442.10.0probable WRKY transcription factor 27
TrEMBLA0A068UUV10.0A0A068UUV1_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-34WRKY family protein