PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g13190
Common NameGSCOC_T00030371001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 299aa    MW: 34429.4 Da    PI: 9.5693
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g13190genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00015174123
                 EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                 y C  Cg+ F +++ L +H r  H
  Cc08_g13190 51 YLCRVCGRKFYTNEKLINHFRQiH 74
                 56*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.8E-55076No hitNo description
Gene3DG3DSA:3.30.160.601.8E-45074IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.4875179IPR007087Zinc finger, C2H2
PROSITE patternPS0002805374IPR007087Zinc finger, C2H2
CDDcd061674.03E-1768203No hitNo description
PfamPF019361.5E-11123203IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10103.7E-9126204IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLEFGFVRYL IAYANRHAFS YVPPEVLAQR KERKALNQLE RKGVAKPNVP YLCRVCGRKF  60
YTNEKLINHF RQIHESEQRK RLTQIESARG KRRVNLVAKY SMKMDKYRNA AREILTPKVG  120
YGLADELKRA GFWVRAVLDK PQAADVALRN HIVDMMDKRL IDCVVLVSDD SDFVRVLKEA  180
RERGLRTVVV GDVNDGALKR TADASFSWQE ILMGKAKKEA VSVVERWKDR DVLKRLEWTY  240
DPETERELCF SDVLSEGSDV EDVFSGNEDG NVQQEDAAPW WKLEPGTVTM NSFSHSRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027180401.10.0uncharacterized protein LOC113779140
TrEMBLA0A068UMX60.0A0A068UMX6_COFCA; Uncharacterized protein
STRINGXP_009631868.11e-155(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-127C2H2 family protein