PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g09710
Common NameGSCOC_T00026917001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 361aa    MW: 39898.5 Da    PI: 6.1325
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g09710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17253287135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Cc08_g09710 253 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 287
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.4E-8114344IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.106.2E-15246284IPR013088Zinc finger, NHR/GATA-type
SMARTSM004014.7E-18247297IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.558247283IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-15248311No hitNo description
CDDcd002023.71E-14252299No hitNo description
PfamPF003201.3E-15253287IPR000679Zinc finger, GATA-type
PROSITE patternPS003440253278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
METPEFFQGG YYNTHMAPEK RLSDAKNSDH FIIDDLLDYP NDDGMVADGT FDTTITAGTS  60
TDSSTVVDTS CNSSFSGSTE PHLPGGDMGC RNFTDGQFSS ELCVPYDDLA ELEWLSNFVE  120
ESFSSEDLQK LQIISGMKAR TNEVSETHDD QPEPNRETAT PMLRPEMSVP AKARSKRSRA  180
APCNWTSRLL MVTPSTTTLT AATTTTIMAA AMSSSSDSEI TPSTGKKAVK APSKKKEVYD  240
QNASMANGEG RKCLHCATDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV  300
LTKHSNSHRK VLELRRQKEM LRAQQQQHQF LHQNMMFDVS SNGDDYLIHQ HIGPDFRQLI  360
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084251.10.0GATA transcription factor 12-like
SwissprotP697818e-99GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A068UI110.0A0A068UI11_COFCA; GATA transcription factor
STRINGXP_010249552.11e-175(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.19e-84GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]