PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g08270
Common NameGSCOC_T00007241001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 353aa    MW: 40736.9 Da    PI: 10.1793
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g08270genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91.1e-141694999
                 HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +k+g l +p +f  ++  g + ++    +l  +  r+W+vk+  +++s    l++GW++F+ +n+L++gDfv Fk++g++ f   v+vf+ 
  Cc08_g08270 16 PGFKNG-LKIPVSFS-KYlcG-E-RS--NYVLLRRGVREWRVKM--SGQS----LEEGWRKFAVENNLEVGDFVAFKHEGNMVF--DVRVFDP 94
                 556666.*******8.77554.2.23..588888999*******..8887....************************999999..8888875 PP
2B357.23e-18133213487
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                    ++++  k+++l +p  fa+++++ + +s +++l+d++ +sW+v++    k +++ +++GW+ F kangLk gD++ ++l+++
  Cc08_g08270 133 SSIKPYCIKNSILHIPLGFARANNLRN-RSCEVILRDPQQKSWQVEM--VPKASHVCFKRGWSAFFKANGLKLGDTFKIELVEN 213
                  56789999***************8885.677****************..99999*************************99874 PP
3B363.43.7e-20259346596
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  ++++++ k ++l lp kfa++ g++k ++ +++++de+ r+W+v+l  ++k++++++++GW++F  +ngLkegD+  F+l++ ++++++v +
  Cc08_g08270 259 TIKAYSIKYSILHLPMKFARSTGLIKLNG-EMIVRDERRRQWSVRL--QQKGKHVLISSGWSKFRTSNGLKEGDTYKFELIK-KGQRPLVNF 346
                  56899999***************998665.9***************..9*******************************99.677788765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-21397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-19497IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.139795IPR003340B3 DNA binding domain
CDDcd100178.82E-15893No hitNo description
SMARTSM010193.3E-171095IPR003340B3 DNA binding domain
PfamPF023621.0E-101891IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-21125220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-21126222IPR015300DNA-binding pseudobarrel domain
CDDcd100174.32E-16129221No hitNo description
PROSITE profilePS5086312.717130224IPR003340B3 DNA binding domain
SMARTSM010192.0E-18131225IPR003340B3 DNA binding domain
PfamPF023621.3E-15133214IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-20250344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-19251347IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-16255348No hitNo description
PROSITE profilePS5086313.972255350IPR003340B3 DNA binding domain
SMARTSM010194.7E-20256350IPR003340B3 DNA binding domain
PfamPF023623.1E-18259346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MRVSPEKPHF FKPILPGFKN GLKIPVSFSK YLCGERSNYV LLRRGVREWR VKMSGQSLEE  60
GWRKFAVENN LEVGDFVAFK HEGNMVFDVR VFDPSHCERE YPWIHDENEE STPTSRKASS  120
HDDEEPNKPC FVSSIKPYCI KNSILHIPLG FARANNLRNR SCEVILRDPQ QKSWQVEMVP  180
KASHVCFKRG WSAFFKANGL KLGDTFKIEL VENGKIPVLD FVPCLTSSNK EPHLQRPTPP  240
QPRPFSTSNN DHPNSFVSTI KAYSIKYSIL HLPMKFARST GLIKLNGEMI VRDERRRQWS  300
VRLQQKGKHV LISSGWSKFR TSNGLKEGDT YKFELIKKGQ RPLVNFYCKY CI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027182274.10.0putative B3 domain-containing protein REM15
TrEMBLA0A068VCW60.0A0A068VCW6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-54B3 family protein