PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g07860 | ||||||||
Common Name | GSCOC_T00011881001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 27436.7 Da PI: 8.239 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.7e-30 | 87 | 146 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k+++ pr+YY+C++a +C+vkkkv+rs dp++++ tYegeHnh+ Cc08_g07860 87 VKDGYHWRKYGQKVTKDNPSPRAYYKCSFApSCQVKKKVQRSVGDPSILIATYEGEHNHQ 146 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-30 | 77 | 148 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.129 | 82 | 148 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-26 | 83 | 148 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-33 | 87 | 147 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-24 | 88 | 146 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MLIDLSENYH ILQSHFIDLV QKYSGDELPK SRKRMFEAEN SFNTHTNDGH EDSVLEEGGS 60 PKRPREIRTN ISRVHVRVDL SDTSLVVKDG YHWRKYGQKV TKDNPSPRAY YKCSFAPSCQ 120 VKKKVQRSVG DPSILIATYE GEHNHQHPLN AETLVSSAHG AASAAFSPGL KCFEFSSRPK 180 ETVDFTNHGL CAKFQRSVSE IGSNCIEQLM VEQIVSSLTR NPSFTTALAT AISGRLLSHD 240 SDQKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-21 | 78 | 148 | 14 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-21 | 78 | 148 | 14 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027082793.1 | 0.0 | probable WRKY transcription factor 40 isoform X1 | ||||
Refseq | XP_027082794.1 | 0.0 | probable WRKY transcription factor 40 isoform X2 | ||||
TrEMBL | A0A068VBF4 | 0.0 | A0A068VBF4_COFCA; Uncharacterized protein | ||||
STRING | XP_010275778.1 | 7e-73 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-53 | WRKY DNA-binding protein 40 |