PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g07850 | ||||||||
Common Name | GSCOC_T00011880001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | WRKY | ||||||||
Protein Properties | Length: 287aa MW: 32059.7 Da PI: 5.9651 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.9 | 1.2e-29 | 156 | 215 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k+++ pr+YY+C++a +C+vkkkv+rs dp++++ tYegeHnh+ Cc08_g07850 156 VKDGYHWRKYGQKVTKDNPSPRAYYKCSFApSCQVKKKVQRSVGDPSILVATYEGEHNHQ 215 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-29 | 147 | 217 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.037 | 151 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-26 | 152 | 217 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-33 | 156 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-24 | 157 | 215 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MDTILEEECL AFDLNTAPAR KAFDSLKPDF EDGHDLVLDE SKSTSGKEEP DDLIDQLNQM 60 KSENRKLKEM LIDLSENYNT LQNHLVDLVQ KHSGDQLTKS RKRKFEAQNS FNSYANEGWN 120 DSLSEAEGSP KRPKEIRTHI SRVHVRVDPS DTSLVVKDGY HWRKYGQKVT KDNPSPRAYY 180 KCSFAPSCQV KKKVQRSVGD PSILVATYEG EHNHQHPLRD EMLVSSAVHG ADAAALSSVP 240 EMESNSIQQL MVEQMASSLT RNASFTAALA AAISGRLLSH DSDQEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-21 | 155 | 217 | 16 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 9e-21 | 155 | 217 | 16 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027084416.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-63 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A068VDW9 | 0.0 | A0A068VDW9_COFCA; Uncharacterized protein | ||||
STRING | XP_010265617.1 | 2e-81 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 3e-61 | WRKY DNA-binding protein 40 |