PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g04300

Common Name

GSCOC_T00034249001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 278aa MW: 30652.6 Da PI: 9.2595

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g04300	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.3e-33	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av++LGG++kAtPk++l++m++kgLtl+h+kSHLQkYRl Cc08_g04300 38 KPRLRWTADLHERFVDAVTKLGGPDKATPKSVLRVMGLKGLTLYHLKSHLQKYRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-32	35	93	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.656	35	95	IPR017930	Myb domain
SuperFamily	SSF46689	3.94E-16	38	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-24	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	9.2E-9	40	91	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-23	135	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MYGGVGGGGV GGSCYPFERN GGGGGGGLGG VVMTRDPKPR LRWTADLHER FVDAVTKLGG 60 PDKATPKSVL RVMGLKGLTL YHLKSHLQKY RLGQQAKKQI PAEQSKENSG DTFGQYNSHA 120 SGSISSRVNT EKREIQISEA LKCQIEVQKR LQEQLEVQKK LQMRIEAQGK YLQAILDKAQ 180 KSLSLDVNNP CNLEATKAQL SEFNLALSSF IENVNAEERN AEIMDKRMLS DMNRKMSEQN 240 YLGLNHEETH DVKLRLEGAS INFDLNTRSS YDFSGTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	38	91	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	38	91	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	38	91	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	38	91	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084214.1	0.0	myb family transcription factor PHL11-like
Swissprot	C0SVS4	2e-81	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A068UVY1	0.0	A0A068UVY1_COFCA; Uncharacterized protein
STRING	XP_004301640.1	1e-104	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	4e-70	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]