PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g03540
Common NameGSCOC_T00034138001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 405aa    MW: 42631.8 Da    PI: 7.3464
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g03540genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.91.6e-21300362163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e+++++ e+++l +++
  Cc08_g03540 300 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRAEVNRIRSEYDQLLAQN 362
                  89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.0E-30195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.6E-52134268No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-18293361No hitNo description
PfamPF001708.6E-20300362IPR004827Basic-leucine zipper domain
SMARTSM003382.9E-22300364IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.162302365IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.44E-11303359No hitNo description
CDDcd147029.33E-24305356No hitNo description
PROSITE patternPS000360307322IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGSSEMDKSS KEAKEAKESK TPPQEQPSAP STGTPDWSGF QAYSPMPPHG FLASSPQAHP  60
YMWGVQHLMP PYGTPPHPYV AMYPPGGIYA HPSIPPGSYP FSPFAMASPN GVAEASGNTP  120
GNTEVDGKPS EGKEKLPIKR SKGSLGSLNM ITGRNNEPGK TAGASANGAY SKSGESASDG  180
SSEGSDANSQ NESQMKSGQR QDSAETSQNG SAAHGSQNGG PNTPHSMVNS VPMLPISAPG  240
APGGLSGPTT NLNIGMDYWG SAASPTVPAM RGKVPTAPVA GGMVTGGRDG VQSQLWIQDE  300
RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRADALKEE NASLRAEVNR IRSEYDQLLA  360
QNASLKERLG EVPGPDDPRS SRNEQHAGND AQHSGQAEPL QRGQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316322RRSRLRK
2316323RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084836.10.0bZIP transcription factor 16-like isoform X1
RefseqXP_027084837.10.0bZIP transcription factor 16-like isoform X1
SwissprotQ501B21e-167BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A068UTT90.0A0A068UTT9_COFCA; Uncharacterized protein
STRINGXP_002518994.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30652446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-147basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]