PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g02980
Common NameGSCOC_T00037801001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 352aa    MW: 38450.6 Da    PI: 7.064
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g02980genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-10103127126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt+lC+ f++ GtC+y  +C+FaH+
  Cc08_g02980 103 YKTKLCCKFRA-GTCPYVTNCNFAHS 127
                  9**********.*************8 PP
2zf-CCCH18.63.3e-06174199126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  yk + C+ f+    C+yGd+C+F H+
  Cc08_g02980 174 YKGRHCKKFYTEEGCPYGDNCTFLHD 199
                  78888********************7 PP
3zf-CCCH42.31.2e-13234259126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  Cc08_g02980 234 WKTRICNKWELTGYCPFGSKCHFAHG 259
                  8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-899133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-15100135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526102129IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011102128IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-8103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7172201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-9172201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23173201IPR000571Zinc finger, CCCH-type
SMARTSM003560.058173200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-10230264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-17230264IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9233260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788233261IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-11234259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDYHRDSGFS SGNVVQVLSG SSGNGVAGNW GRGSVDQAAW ATEDDYRVWN RETSVEINSN  60
SNYDGRQSQS FSGGEPPNKK SRSSQMEDLT ASSRSKAIGK MFYKTKLCCK FRAGTCPYVT  120
NCNFAHSIEE LRKPPPNWQE IVAAHEEERA ASMEPREEFQ IPSLVGGAES QRSYKGRHCK  180
KFYTEEGCPY GDNCTFLHDE QSKARESEAI SLGPGMGGGY AGNPTGTNLK PSNWKTRICN  240
KWELTGYCPF GSKCHFAHGA EELHQFGGGP VESEVPTTPS DTKQVAVPSK VVADAVVGSV  300
TPVPHSDSYH VGVPAQKLSN VIQKTGQKPH LKWKGPDKIS KIYGDWIDDL E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027182933.10.0zinc finger CCCH domain-containing protein 12
RefseqXP_027182934.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-121C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A068UXL70.0A0A068UXL7_COFCA; Uncharacterized protein
STRINGMigut.N01445.1.p1e-173(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-124C3H family protein