PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g02550
Common NameGSCOC_T00037731001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 421aa    MW: 46239.4 Da    PI: 8.9037
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g02550genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1292.3e-0989151163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  eke +r rr   NRe+Ar   +R++a  eeL++k+++L+ eN+ Lkk+ e   ke+++lk+ +
  Cc08_g02550  89 EKETRRLRRVLANRESARQTIRRRQAMFEELTRKAANLTLENENLKKKKELAMKEYDSLKNTN 151
                  7999********************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.2E-683149No hitNo description
SMARTSM003383.3E-889153IPR004827Basic-leucine zipper domain
PfamPF001701.0E-889151IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.84191154IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.0E-693149No hitNo description
CDDcd147028.66E-1594145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGGEDAPMGE AGQVGGSGWW TICPRPTLLL FLLGQAIVIK EPSERVSNVI TRTVKDEKND  60
EFKAGGLSCS TSYFSVGGSS SRQPSTEIEK ETRRLRRVLA NRESARQTIR RRQAMFEELT  120
RKAANLTLEN ENLKKKKELA MKEYDSLKNT NDYLMEQMAK LVKPKSEEIT GESNFNCGGC  180
SVSACSRTPF SPYTPSPILP LHWPSAVQPL DATLFRSRSL CDIANPSLFA MTHEPRPELL  240
SDQRESAMVA NPEALLYVLP FPCFFPLHSP TNALRRQPSP QNDGQNQAYS NNQCAAIKTE  300
ASNSTVNSSV DDVHQAGFGY PPDGGGNIGG TYPDRMVLMP TPLRCVRPAT SLPVGLSTAA  360
RRNDTLTKAE VAASSAGQRE KGASEEYQKP VVYSRKMSED ATTAAEARRR RKELMKLKIL  420
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1407412RRRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083075.10.0uncharacterized protein LOC113705422
TrEMBLA0A068UXL40.0A0A068UXL4_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54171724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.13e-12bZIP family protein