PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g02100
Common NameGSCOC_T00037671001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 554aa    MW: 61389.4 Da    PI: 5.9524
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g02100genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.14e-28311364256
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                   +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Cc08_g02100 311 SKVDWTPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 364
                  6899****************.********************************96 PP
2Response_reg34.79.4e-13211262109
                   EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESE CS
  Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakd 96 
                   l+++ +   +  +r  le+ +y +v  + +  eal  + +k   +++ ++ ++  +++G+  +k +++++ +lp i++++++  +++ +++ +Ga +
   Cc08_g02100  21 LLIESDACSAVEMRLKLEEMDY-IVSIFCNENEALSAISNKSecFHVAIVEVNTQNSSGI--FKFLETAN-DLPTIMISDNNCISTMMKCIALGAVE 113
                   666666666667778889****.***************999999*************995..78888877.9************************* PP

                   EEESS--HHHHHH CS
  Response_reg  97 flsKpfdpeelvk 109
                   fl Kp++ ++l +
   Cc08_g02100 114 FLQKPVSDDKLQN 126
                   ********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.2E-1616149No hitNo description
SuperFamilySSF521726.97E-1616134IPR011006CheY-like superfamily
SMARTSM004480.00818128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.43719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.6E-920126IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.32E-821131No hitNo description
PROSITE profilePS5129415.317307366IPR017930Myb domain
SuperFamilySSF466899.86E-19308367IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27308367IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-25311364IPR006447Myb domain, plants
PfamPF002493.8E-8313362IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MVCTADELLG WKDFPKGLKV LLIESDACSA VEMRLKLEEM DYIVSIFCNE NEALSAISNK  60
SECFHVAIVE VNTQNSSGIF KFLETANDLP TIMISDNNCI STMMKCIALG AVEFLQKPVS  120
DDKLQNIWQH VVHKAFNAGG KDVSEALKPV KESLISMLQL PFGNAETGKQ ASVEAEQENN  180
QDLLSGCDKY PAPSTPQLKQ GERSLDDGDC QDQANFSMEQ DSAEQDGECK SVETTCGNSI  240
FECTALGSPA SGEDAVKEEH ESTNCCRTEI NTTTCYEGKD RPSNKTSNAA GLNRSSAVRN  300
TCGIKASKKR SKVDWTPELH KKFVQAVEQL GIDQAIPSRI LELMKVEGLT RHNVASHLQK  360
YRMHRRHILP KENERRWPHP GGSAQRNYYP HKPVMAFPPY HPNHTIPGGQ VYPAWIPPGT  420
YTGGIHIWGS PYYPGWQVPN ESWYWKPYSM THADAWGCPV MPQTVGSYPQ FAQTAPDFQT  480
TIEMQYTGST LLNPSDLHAA EEVIDQVVKE AISKPWLPLP LGLKPPSTEC VLNELSRQGI  540
SKIPPHTKAP NIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-18310364155Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1754457e-36KC175445.1 Capsicum annuum APRR2-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084072.10.0two-component response regulator-like APRR2 isoform X2
RefseqXP_027084082.10.0two-component response regulator-like APRR2 isoform X4
SwissprotQ6LA431e-145APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A068UXG70.0A0A068UXG7_COFCA; Uncharacterized protein
STRINGXP_009595585.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-149ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]