PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g01350

Common Name

GSCOC_T00038400001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 350aa MW: 39063.2 Da PI: 6.4312

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g01350	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.7	4.8e-23	258	305	3	50
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 +++l+d s +F+lpi+ AA++L+vc+Tv+K++CRq G++RWP+Rkik Cc08_g01350 258 GKMKLKDFSDFFHLPITVAARKLKVCPTVIKKKCRQGGLSRWPYRKIK 305 6899*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.517	245	327	IPR003035	RWP-RK domain
Pfam	PF02042	5.4E-19	260	305	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MENKHCSIVP YHDPTDDPSS ADQILMFNNE TPCLGLAEFP EIAEPSSRHP MSFPQFQPQG 60 VGIDNILDPN DPLSDPFIWE VINSESTGGN AAAGNCEAGS SGIHGERIIG QGNNSSDFSG 120 AMPPQTSSGF GNPIQLSVWP VPPSPYNCSC CHILREIIHI NGTQVSNFEI HGRLGVISHG 180 VLDTYEMDWS TRSHQYRIVK NFLVQYCQER KREGYTMIQD PLSVFYEALC VGFNEKQSHD 240 DLFLQPSSVF SEQRERTGKM KLKDFSDFFH LPITVAARKL KVCPTVIKKK CRQGGLSRWP 300 YRKIKGIKRK ISMKQQSLTA ATAEERAQVL AEIQVLEQKL ENIFAELST*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MENKHCSIVP YHDPTDDPSS ADQILMFNNE TPCLGLAEFP EIAEPSSRHP MSFPQFQPQG  60
VGIDNILDPN DPLSDPFIWE VINSESTGGN AAAGNCEAGS SGIHGERIIG QGNNSSDFSG  120
AMPPQTSSGF GNPIQLSVWP VPPSPYNCSC CHILREIIHI NGTQVSNFEI HGRLGVISHG  180
VLDTYEMDWS TRSHQYRIVK NFLVQYCQER KREGYTMIQD PLSVFYEALC VGFNEKQSHD  240
DLFLQPSSVF SEQRERTGKM KLKDFSDFFH LPITVAARKL KVCPTVIKKK CRQGGLSRWP  300
YRKIKGIKRK ISMKQQSLTA ATAEERAQVL AEIQVLEQKL ENIFAELST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A068V0M6	0.0	A0A068V0M6_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	6e-11	RWP-RK domain-containing protein