PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g01240

Common Name

GSCOC_T00038414001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 586aa MW: 65794.8 Da PI: 6.4695

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g01240	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.3	2.4e-29	424	508	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r+++e++++r k+plWe++s+ m++ gf+rs+k+Ckekwen+nk++kk +e++k+ ++ +tc+yfdql+ Cc08_g01240 424 RWPKAEVEALIQIRSSLEQKFQRPGIKGPLWEQISNSMASMGFQRSAKRCKEKWENINKYFKKSRENAKQC-RKKFKTCQYFDQLD 508 8******************************************************************97.66678******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.329	417	481	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.6E-4	418	480	IPR009057	Homeodomain-like
SMART	SM00717	0.0078	421	483	IPR001005	SANT/Myb domain
CDD	cd12203	3.77E-28	423	488	No hit	No description
Pfam	PF13837	6.5E-21	423	510	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MGENHQQQPV FSANQSHQYN HQQPYIFQET QNFQTIPDFF HYHHHFQALL QQQRRLQDQL 60 QQCVLGQENV VSTSATTAAA AGNNIRPSVS FFPLNFKPPD LNENITSSKN GGLDDDGSED 120 DLFRRNSAAA AALAMASPHY CWQNQEDSAT AIRQPFWKPL CTNISDGNNN SQDKEVRLEM 180 HQNKYYKSSE DTEQMNSSLE NSKNRLFGEL ESICRSASVA SEANKTGGAS AGNLATTTST 240 CLPITLDKHN TNAGATAAAA AIGHCHDGSE SISGHEAPVA VVSKNMKRKK LKDELSSMAI 300 FFEGLVHQLM DHQEALHSNF MNAIERLDKE RREREDAWRR QELEKLEQDM AARARERALA 360 SSREASIVSY LEKITGQSIK LPPRNHPSDF QPAMISSGAM NGELSPSTSK VCRDDLSINM 420 TSRRWPKAEV EALIQIRSSL EQKFQRPGIK GPLWEQISNS MASMGFQRSA KRCKEKWENI 480 NKYFKKSREN AKQCRKKFKT CQYFDQLDQL HSKSQLANGG SYSCSSSSEH QAKPNNENQL 540 PNPIEGLVPA RNFRQGEFYF IPSMNVSEEE EEGEDGNVDY PDEGD*

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MGENHQQQPV FSANQSHQYN HQQPYIFQET QNFQTIPDFF HYHHHFQALL QQQRRLQDQL  60
QQCVLGQENV VSTSATTAAA AGNNIRPSVS FFPLNFKPPD LNENITSSKN GGLDDDGSED  120
DLFRRNSAAA AALAMASPHY CWQNQEDSAT AIRQPFWKPL CTNISDGNNN SQDKEVRLEM  180
HQNKYYKSSE DTEQMNSSLE NSKNRLFGEL ESICRSASVA SEANKTGGAS AGNLATTTST  240
CLPITLDKHN TNAGATAAAA AIGHCHDGSE SISGHEAPVA VVSKNMKRKK LKDELSSMAI  300
FFEGLVHQLM DHQEALHSNF MNAIERLDKE RREREDAWRR QELEKLEQDM AARARERALA  360
SSREASIVSY LEKITGQSIK LPPRNHPSDF QPAMISSGAM NGELSPSTSK VCRDDLSINM  420
TSRRWPKAEV EALIQIRSSL EQKFQRPGIK GPLWEQISNS MASMGFQRSA KRCKEKWENI  480
NKYFKKSREN AKQCRKKFKT CQYFDQLDQL HSKSQLANGG SYSCSSSSEH QAKPNNENQL  540
PNPIEGLVPA RNFRQGEFYF IPSMNVSEEE EEGEDGNVDY PDEGD*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00651	PBM	Transfer from LOC_Os02g01380	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084142.1	0.0	trihelix transcription factor GT-2-like
TrEMBL	A0A068UYX9	0.0	A0A068UYX9_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11622	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	7e-36	Trihelix family protein