PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g21260

Common Name

GSCOC_T00011162001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 294aa MW: 33536.9 Da PI: 8.0343

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g21260	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.5	1.1e-28	129	216	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++g+w+vtk+++eH+H+l+p Cc07_g21260 129 FYNSYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKISSGRWVVTKFVKEHTHPLNP 216 ****************************************9988..9************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-26	129	216	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MSLPSDSPFR FIEPARCRTR VFSNSLLKGW IFSGQQLQIL MEFEVDVDVN GEVVGSSVDI 60 DGRTDDENAT AGSPVDGVLQ HCPDVKVDQH VSRREIVELE ETQAVNILVS NDEPYVGQEF 120 ESEAAAHAFY NSYATRVGFI IRVSKLSRSR RDGSAIGRAL VCNKEGFRMP DKREKIVRQR 180 AETRVGCRAM ILVRKISSGR WVVTKFVKEH THPLNPGKGR KDLIYDQYPN EHDKIRELSQ 240 QLAVEKKRAA TYKRHLEMIF EHIEEHNLSL SKKIQDVVNN VREIESKEHQ SHR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027119573.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027156270.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027156292.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027156293.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A068V8N6	0.0	A0A068V8N6_COFCA; Uncharacterized protein
STRING	XP_008222480.1	1e-133	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11568	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-104	FAR1 family protein