PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g15790

Common Name

GSCOC_T00036426001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bZIP

Protein Properties

Length: 361aa MW: 40962.4 Da PI: 7.1024

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g15790	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.5	4.4e-11	76	106	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k+ rr+++NReAAr+sR+RKka++++Le+ Cc07_g15790 76 DKVLRRLAQNREAARKSRLRKKAYVQQLENS 106 7999*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.0E-8	69	120	No hit	No description
SMART	SM00338	3.2E-6	73	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.634	75	117	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.8E-8	76	110	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.34E-6	77	116	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.5E-30	163	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MHSTTTQYVA SRRMGLYEPM HPIGMWGDFK GNGCPNASAS TILQVETNLD NQSEDTSHGT 60 LGTPSKYDQE ASKPVDKVLR RLAQNREAAR KSRLRKKAYV QQLENSRLRL VQLEQELDRA 120 RQQGLYAAGG LDISQLTCSG ALNSGSAAFE VEYGRWVEEQ NRQVNELRNA LHSHMSEEEL 180 RLLVDGGINH YFDLFRMKET AAKADVFYLM SGMWKTCVER LFLWIGGFRP SDLLKILSQH 240 IQPLSDEQVL NVYHLTHACQ QAEDALSQGM DKLHQFLAES VCRAQLREVN YPQMEAAIEN 300 LEALERFVKQ ADHLRQATLQ QMSGILTIRQ SARGLLAMGE YFERLRTLSS LWTKRNSEPA 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MHSTTTQYVA SRRMGLYEPM HPIGMWGDFK GNGCPNASAS TILQVETNLD NQSEDTSHGT  60
LGTPSKYDQE ASKPVDKVLR RLAQNREAAR KSRLRKKAYV QQLENSRLRL VQLEQELDRA  120
RQQGLYAAGG LDISQLTCSG ALNSGSAAFE VEYGRWVEEQ NRQVNELRNA LHSHMSEEEL  180
RLLVDGGINH YFDLFRMKET AAKADVFYLM SGMWKTCVER LFLWIGGFRP SDLLKILSQH  240
IQPLSDEQVL NVYHLTHACQ QAEDALSQGM DKLHQFLAES VCRAQLREVN YPQMEAAIEN  300
LEALERFVKQ ADHLRQATLQ QMSGILTIRQ SARGLLAMGE YFERLRTLSS LWTKRNSEPA  360
*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074141.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A-like
Swissprot	P14232	1e-165	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A068TYL9	0.0	A0A068TYL9_COFCA; Uncharacterized protein
STRING	evm.model.supercontig_100.3	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-161	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]