PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g15120
Common NameGSCOC_T00036516001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family CAMTA
Protein Properties Length: 1048aa    MW: 116369 Da    PI: 5.4526
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g15120genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1140.55.2e-4448735118
         CG-1  35 ksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                  + gsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+e++++fqrr+yw+Leeel++ivlvhy+evk
  Cc07_g15120   4 SGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEDDENFQRRSYWMLEEELSHIVLVHYREVK 87 
                  579******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010761.9E-44187IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143762.551192IPR005559CG-1 DNA-binding domain
PfamPF038593.7E-36585IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.9E-16458544IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.202.1E-15493510IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.73E-15651754IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.1E-15653756IPR020683Ankyrin repeat-containing domain
CDDcd002041.18E-11658752No hitNo description
PROSITE profilePS5029716.388660754IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0025693722IPR002110Ankyrin repeat
PfamPF000233.4E-4693724IPR002110Ankyrin repeat
PROSITE profilePS5008810.099693725IPR002110Ankyrin repeat
SMARTSM002483400732761IPR002110Ankyrin repeat
SuperFamilySSF525406.11E-8868925IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000156.1874896IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.382876904IPR000048IQ motif, EF-hand binding site
PfamPF006120.014876895IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0052897919IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.67898922IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4902919IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1048 aa     Download sequence    Send to blast
MSLSGGSLFL FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE RLKAGSIDVL HCYYAHGEDD  60
ENFQRRSYWM LEEELSHIVL VHYREVKGNR TNYNRVREIG EAIPNTQESE DDAPNSEFNS  120
NSTSKFHSYG YQVTSQITDT VSLNSAQASE YEDAESAYTQ QSTSGFHTFL EIQPPVLQKA  180
EDGYQGQFSG VPDVNFASIP QGEKDQSTTG AGLSYMPEGH LDFPSWGNVL DSRNGGYQSV  240
NFQPSVSATQ HGTINVMPGG MNDILGQALT DGLGKRQDSD AHVGGLEQWQ TSEVDASSLS  300
KWHMDQKLNL PSGRNLSTSF NEANNAELPN SSETFSMLKS PIETDVQVDL IRAESGISAK  360
SAFNGNLGIE GKAEYPTLRQ PLLDGVLKEG LKKLDSFDRW MSRELGDVNE SHIQSSSGTY  420
WETVGNDDGL GDSNIAPQVH IDSYMMSPSI AQDQLFSIID FSPNWAYSGS EMKVLIMGRF  480
LKSQEELGKY KWACMFGEVE VQAEVIANGA LRCLTPLHEA GRVPFYVTCS NRLACSEVRE  540
FEFRVSNVKD DDVALLTSGI IDECQLLTRF GKLLTTGSHN YQDTIPGIMD QLSTLRSKIE  600
SLVINDNNEW EGMLNLTPEE FSVDKVKDQL LVKLLKDRLY LWLRQKVAEG GKGPSMLDEG  660
GQGVLHLAAA LGYDWALSPT IAAGVSVNFR DLNGWTALHW AASFGRERTV ASLISLGASP  720
GALTDPTPKY PSGIPPAELA SNNGHKGIAG YLAESTLSSH LSSLKVKDDK EGYKDDKEDY  780
NGEGSGANVV QTASERTATP IADGDLPVLS LKDSLAAVRN ATQAHARIHQ VFRVQSFQRK  840
QQNEYGSSGL GISDERALSL LSAKTKRAGQ RDEPVHAAAT QIQKKFRSWK GRKEFLQKRQ  900
QIIKIQAHVR GHQVRKNYRS IIWSVGILEK VILRWRRKGS GLRGFKPEAP PVETSIQGSS  960
SKEDDYDFLK EGRKQTENRL QKALARVKSM VQYPEARDQY RRLLNVVSDM QETKAVYDRA  1020
LDNSDEAADF DEDLIDLDAL LDDDPLM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074474.10.0calmodulin-binding transcription activator 3-like
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A068TZG30.0A0A068TZG3_COFCA; Uncharacterized protein
STRINGVIT_07s0141g00250.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]