PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g12890 | ||||||||
Common Name | GSCOC_T00036818001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | B3 | ||||||||
Protein Properties | Length: 204aa MW: 23547.3 Da PI: 10.0505 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.4 | 9.7e-17 | 3 | 78 | 17 | 96 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +lp kfa+++++++ +s +l+l+d++ rsW +l + +++r+ ++ G eF an+LkegD++ F+l++ +++++v+ + Cc07_g12890 3 YLPMKFARSNDLSN-RSCKLILKDPKKRSWHAEL--NSRGSRVCISFGLDEFFTANDLKEGDTCSFELVE-NGETPVINF 78 79********9885.677****************..999999*************************998.566677765 PP | |||||||
2 | B3 | 62.9 | 5.2e-20 | 101 | 189 | 3 | 95 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++++++ k++ l lp kfa+ +g+ k ++ +++++d + r W++kl + +++r+vl++GW++F +angLk+gD F+ ++ +++++vv Cc07_g12890 101 VSTIKPYNIKRCVLHLPVKFAKPNGLTKLKG-EMIVKDDRQRLWKIKL--KDRGDRVVLSSGWSHFSRANGLKVGDRYKFEIIK-KGKRPVVN 189 567899******************9998776.9***************..9999***************************998.77778886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 4.9E-7 | 1 | 82 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.407 | 1 | 81 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.0E-15 | 3 | 78 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.84E-15 | 3 | 79 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-16 | 3 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-16 | 3 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-22 | 94 | 190 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-20 | 95 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.8E-16 | 99 | 194 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.36E-17 | 99 | 192 | No hit | No description |
PROSITE profile | PS50863 | 13.479 | 99 | 193 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.4E-18 | 100 | 190 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MQYLPMKFAR SNDLSNRSCK LILKDPKKRS WHAELNSRGS RVCISFGLDE FFTANDLKEG 60 DTCSFELVEN GETPVINFLT HLTKDDQPPP QPATDNHSYF VSTIKPYNIK RCVLHLPVKF 120 AKPNGLTKLK GEMIVKDDRQ RLWKIKLKDR GDRVVLSSGW SHFSRANGLK VGDRYKFEII 180 KKGKRPVVNF HCEYFFPVYF MPC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075124.1 | 1e-136 | B3 domain-containing protein REM14-like isoform X1 | ||||
Refseq | XP_027075125.1 | 1e-136 | B3 domain-containing protein REM14-like isoform X1 | ||||
Refseq | XP_027075126.1 | 1e-136 | B3 domain-containing protein REM14-like isoform X1 | ||||
TrEMBL | A0A068TZK2 | 1e-150 | A0A068TZK2_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 6e-25 | B3 family protein |