PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g12880 | ||||||||
Common Name | GSCOC_T00036820001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | B3 | ||||||||
Protein Properties | Length: 255aa MW: 29420.6 Da PI: 7.3384 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.4 | 7.2e-15 | 25 | 99 | 15 | 98 |
-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +p +f+ ++ ggk ++ + +l+ ++W+v++ +++ +l++GW+ F+ +n+L++gDfvvF+++g++ f v vf+ Cc07_g12880 25 GVKIPASFL-NYlGGKI-SENQAVLRRGGVKEWRVEI----SDQ--WLREGWRAFAVENNLQVGDFVVFEHEGNMVF--EVLVFD 99 5789*****.6655553.445799999999*******....443..5*************************99999..777776 PP | |||||||
2 | B3 | 56.7 | 4.4e-18 | 161 | 242 | 10 | 95 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +l +rl +p++fa e+g+ ++ ++l+d+s rsW++k+ + +s+ ++ GWk+F+ka+gLkegD +v++l+++ ++ +v+ Cc07_g12880 161 NLLYHRLNIPRDFAMENGLF-GRECNIKLRDQSQRSWSLKI--KSSSDCASIQCGWKSFAKAQGLKEGDEFVLELTEN-GEAPVFN 242 455689***********554.33458***************..8888889************************9875.4446665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-22 | 7 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-21 | 7 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.238 | 11 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.64E-18 | 12 | 99 | No hit | No description |
SMART | SM01019 | 3.0E-16 | 14 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-12 | 24 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 147 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-19 | 149 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.25E-17 | 151 | 244 | No hit | No description |
SMART | SM01019 | 2.1E-15 | 152 | 247 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.761 | 152 | 246 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-15 | 156 | 242 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSMRTRIQPE KPHFFKPILP GFIDGVKIPA SFLNYLGGKI SENQAVLRRG GVKEWRVEIS 60 DQWLREGWRA FAVENNLQVG DFVVFEHEGN MVFEVLVFDP SHCERKYASI DDEKKCSQKF 120 KAAEIPRSKK VKLELSDDQE EPDSTDQICR PYFIFTVKPI NLLYHRLNIP RDFAMENGLF 180 GRECNIKLRD QSQRSWSLKI KSSSDCASIQ CGWKSFAKAQ GLKEGDEFVL ELTENGEAPV 240 FNFYGKLFCY YYVS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075128.1 | 1e-179 | B3 domain-containing protein REM14-like isoform X2 | ||||
TrEMBL | A0A068TZN9 | 0.0 | A0A068TZN9_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 3e-40 | B3 family protein |