PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g10660
Common NameGSCOC_T00037088001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WOX
Protein Properties Length: 286aa    MW: 32091.4 Da    PI: 6.8905
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g10660genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.5e-203798257
                 T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++R+t+t+eq+++L++l+++   r p+a++++++++kl    +++ ++V++WFqN++a+e++
  Cc07_g10660 37 STRWTPTTEQIRILKDLYYNngVRSPTADQIQKISAKLrqygKIEGKNVFYWFQNHKARERQ 98
                 58*****************8678*************************************97 PP
2Wus_type_Homeobox115.13.4e-3736100265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRWtPt+eQi+iL++ly+ +G+r+P++++iq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
        Cc07_g10660  36 SSTRWTPTTEQIRILKDLYYnNGVRSPTADQIQKISAKLRQYGKIEGKNVFYWFQNHKARERQKK 100
                        789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-1124100IPR009057Homeodomain-like
PROSITE profilePS5007110.4793399IPR001356Homeobox domain
SMARTSM003892.5E-635103IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-73898IPR009057Homeodomain-like
CDDcd000861.30E-738100No hitNo description
PfamPF000462.8E-173898IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEPQQQQNHQ QQQQQNQLLP NEDGGCSKNG FLCRQSSTRW TPTTEQIRIL KDLYYNNGVR  60
SPTADQIQKI SAKLRQYGKI EGKNVFYWFQ NHKARERQKK RLTTDISAMQ RGVWRSDYQE  120
SICSTKYPNI TSGAPSSSAS VGGLHAAGQV GNYGYGSFAM EKSFRDCSIS PSGKASGSMF  180
QNFSWAGAGA GAEPYPSPYQ FLEKKTCFVE TLDDQEQEEE PVPELETLPL FPMHGEDVSG  240
FCTNKQPEQN CYYTDWYQPN GNVGYSRTSL ELSLNTYGGR SQNSP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587430.11e-101PREDICTED: protein WUSCHEL
RefseqXP_016493082.11e-101PREDICTED: protein WUSCHEL-like
SwissprotQ8LL112e-93WUS_PETHY; Protein WUSCHEL
TrEMBLA0A068U2S00.0A0A068U2S0_COFCA; Uncharacterized protein
STRINGXP_009587430.11e-100(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-41WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]