PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g08480 | ||||||||
Common Name | GSCOC_T00040222001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 262aa MW: 29520.4 Da PI: 9.0927 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40 | 6.5e-13 | 197 | 221 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C++ ++C+FaHg Cc07_g08480 197 KTELCNKWQETGSCPFAGNCRFAHG 221 9***********************8 PP | |||||||
2 | zf-CCCH | 21.6 | 3.9e-07 | 234 | 259 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ Cc07_g08480 234 YKTEVCRMVLAGDICPYGHRCHFRHS 259 9**********55**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-15 | 190 | 228 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-9 | 192 | 227 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.4E-7 | 195 | 222 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 195 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 197 | 221 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-12 | 229 | 260 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-8 | 230 | 259 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.272 | 233 | 261 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 233 | 260 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-4 | 234 | 259 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MTDEVVTPDR CHSDSSLILE YQQLYNRYAF CLANLRESIK EVQALGQDNE SLRLANADLV 60 HRLSLLSRAT IHNCLLSDFN RLRISGNDTP SPRLYSREAS PAPGPDVIQQ NRFQRRHLAE 120 RVSLPKSISI RSAGYLKFKP KSAGKYEAPT TQASSPNRVN SPPLPDSEKA RQRVYVAGGG 180 REEEASQFEV YNQGMSKTEL CNKWQETGSC PFAGNCRFAH GIMELRPVIR HPRYKTEVCR 240 MVLAGDICPY GHRCHFRHSL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 8e-19 | 197 | 259 | 5 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074162.1 | 0.0 | zinc finger CCCH domain-containing protein 15-like isoform X1 | ||||
TrEMBL | A0A068U565 | 0.0 | A0A068U565_COFCA; Uncharacterized protein | ||||
STRING | XP_009783725.1 | 1e-106 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7784 | 21 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-64 | C3H family protein |