PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g08110 | ||||||||
Common Name | GSCOC_T00040174001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 35912.6 Da PI: 7.9732 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 1e-09 | 241 | 283 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++RR+ri +++ L++l+P+ K++ +++LekA+ Y+k Lq Cc07_g08110 241 AAKNRRERISERLKILQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 283 569*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.72E-14 | 231 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 232 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.307 | 233 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.18E-11 | 235 | 287 | No hit | No description |
SMART | SM00353 | 7.5E-12 | 239 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.9E-7 | 243 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MELVKDHAPK RSTLCLIQPH PHYENDQFRE VSQNAFPGLS SSDKSTGIPR NFGVTSPSSL 60 SSPSSTNSDG LGYQQGIKTL PEDGNSVINF RGVYGDFANA GGSLLSFDHS QNSFPGIITT 120 QDDYSVWEDN LHFTYQDQLN NSRCSTPNPR PLENSNNNQS SSSYASTSNG VPFGWHSTEV 180 NANASKNNSI QDLGRQEACT SAKRPYTEES TQALKKQCTS VTKTTALKSK STPSKDPQSV 240 AAKNRRERIS ERLKILQDLV PNGSKVDLVT MLEKAISYVK FLQLQVKVLA TDEFWPAQGA 300 KAPDLSQVKE AIDAILASQR DRNSSSSK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075614.1 | 0.0 | putative transcription factor bHLH086 | ||||
Refseq | XP_027078703.1 | 0.0 | putative transcription factor bHLH086 | ||||
TrEMBL | A0A068U2K1 | 0.0 | A0A068U2K1_COFCA; Uncharacterized protein | ||||
STRING | VIT_14s0006g01470.t01 | 1e-86 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9986 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 2e-57 | ROOT HAIR DEFECTIVE6 |