PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g07540
Common NameGSCOC_T00040104001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 280aa    MW: 30984 Da    PI: 8.2816
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g07540genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-18134188256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tk q   Lee F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  Cc07_g07540 134 RKKLRLTKVQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 188
                  678899***********************************************98 PP
2HD-ZIP_I/II122.61.9e-39134223191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+k q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  Cc07_g07540 134 RKKLRLTKVQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 223
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-18123191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-17127193IPR009057Homeodomain-like
PROSITE profilePS5007117.362130190IPR001356Homeobox domain
SMARTSM003891.1E-15132194IPR001356Homeobox domain
PfamPF000464.1E-16134188IPR001356Homeobox domain
CDDcd000866.18E-16134191No hitNo description
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
PfamPF021835.3E-10190224IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.3E-24190233IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGLDDVCSPG LVLGLGFPST AENKPLKTDN QKSRKPSLLK SEQLANFEPS LTLSLSGGDT  60
FDMLVKKLDA TANKASNNEP PPSAADLHRQ DSAASSFSNN SVKRERELGS SEEVEIERLS  120
SRVSDEDDDG SNGRKKLRLT KVQSALLEES FKQHSTLNPK QKQDLARELN LRPRQVEVWF  180
QNRRARTKLK QTEVDCEFLK KCCETLTDEN RRLQKELQEL KALKLAQPLY MQLPAATLTM  240
CPSCERVGGV GENSSSKSPF SMAPKPHFFN PFTNPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182190RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075542.10.0homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-95HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A068U3C20.0A0A068U3C2_COFCA; Uncharacterized protein
STRINGEOX917921e-138(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-86HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]