PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g07330 | ||||||||
Common Name | GSCOC_T00040079001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bZIP | ||||||||
Protein Properties | Length: 235aa MW: 26629.8 Da PI: 6.5189 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.3 | 2.6e-11 | 121 | 178 | 4 | 61 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++ rr+ +NRe+A+rsR RK++ +e+L++ v L N++L ++l + +++ +++ Cc07_g07330 121 ERKRRRMLSNRESAKRSRMRKQKHLENLRNQVSRLRIGNRELVNRLRVVTHHCQLVRT 178 46789999*************************************9999999986655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.9E-10 | 114 | 176 | No hit | No description |
SMART | SM00338 | 2.7E-12 | 118 | 182 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.151 | 120 | 183 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.76E-10 | 122 | 173 | No hit | No description |
Pfam | PF00170 | 2.2E-9 | 122 | 178 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.16E-21 | 123 | 174 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 125 | 140 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MLSADCLFGN PFPAFESGFP PWDCQEPPFV FPQHDDPILS PLGELRVETQ EPVISNSGSE 60 TYTPPPLDPT GQAISISGSE NYDPTPLDSS SGSEEPNQNN KRPYPGSDDT TNPPVDSAAD 120 ERKRRRMLSN RESAKRSRMR KQKHLENLRN QVSRLRIGNR ELVNRLRVVT HHCQLVRTDN 180 DRLRSESVIL RQRLWDIRQV LLVRQLQQQL ATSAWPCNNL TPMNDETIPQ PLIT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 125 | RKRRR |
2 | 121 | 142 | RKRRRMLSNRESAKRSRMRKQK |
3 | 134 | 139 | KRSRMR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027179696.1 | 1e-155 | basic leucine zipper 25-like | ||||
TrEMBL | A0A068U4U6 | 1e-170 | A0A068U4U6_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2820 | 22 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37730.1 | 9e-30 | basic leucine-zipper 7 |