PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g05480
Common NameGSCOC_T00039821001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 266aa    MW: 30652.4 Da    PI: 10.0353
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g05480genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-151190186
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86
                 ffkvl+p   + s+ l++p  f +++++  +e     l+ +sg++W+vk+  ++ +++y++t+GW +Fvk++gLk g+f+vF l+ g
  Cc07_g05480 11 FFKVLVP--GFYSK-LSMPPLFWKTFEHLLAE--SALLQIKSGETWSVKI--ERIGEQYFFTDGWPKFVKDHGLKMGEFLVFWLVlG 90
                 6666633..44443.78899998888655344..58888899********..******************************97733 PP
2B339.69.2e-131812531287
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                   + r+ +  +fa++hg+++++  +++l++++g sW+v+l+   ++ + ++ kGW +F + n L+ g    F+++ +
  Cc07_g05480 181 HRYRMNVKMPFAKKHGLVNKS--EVMLQNTNGASWRVELRLYDND-MLYMCKGWTDFLENNALELGQEYAFEFIPE 253
                  455788999*******99544..8***************655554.578888**************9999998753 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-18699IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.0568106IPR003340B3 DNA binding domain
CDDcd100171.25E-159100No hitNo description
SuperFamilySSF1019369.42E-209108IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-131192IPR003340B3 DNA binding domain
SMARTSM010195.7E-1111101IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266170265IPR003340B3 DNA binding domain
CDDcd100171.25E-11171263No hitNo description
Gene3DG3DSA:2.40.330.101.9E-15171263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-15171262IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-7173265IPR003340B3 DNA binding domain
PfamPF023628.7E-10182253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MTSKAKASPS FFKVLVPGFY SKLSMPPLFW KTFEHLLAES ALLQIKSGET WSVKIERIGE  60
QYFFTDGWPK FVKDHGLKMG EFLVFWLVLG KNNSTTIFEV AMYGTTGCDK DLNPSAPIHD  120
PRHFLPQLVD QPNPEINRNP LTQPSKSAVQ GSRKRKSKKI RYDKGSLDAG KYYTKVLANY  180
HRYRMNVKMP FAKKHGLVNK SEVMLQNTNG ASWRVELRLY DNDMLYMCKG WTDFLENNAL  240
ELGQEYAFEF IPETDSIRVQ PFKKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027078058.10.0B3 domain-containing protein REM5-like
TrEMBLA0A068U4A40.0A0A068U4A4_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-23B3 family protein