PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g05080
Common NameGSCOC_T00039770001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TCP
Protein Properties Length: 411aa    MW: 45046.2 Da    PI: 10.5293
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g05080genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.41.2e-421012462133
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec....eaesssssasnsssg.... 88 
                  ++k+drhski+T++g+RdRRvRls+++a++fF Lqd LG+dk+s+t++WLl+++k+aikel +    + +++ +c    +++ ++++a++++++    
  Cc07_g05080 101 PAKRDRHSKICTAQGPRDRRVRLSMDIARKFFGLQDLLGYDKASQTLDWLLTKSKAAIKELLDMkdtDHDANAKClcfwSEAGNVVAAGTNTKEdesk 198
                  689**********************************************************9996654444455666663333333333222223444 PP

          TCP  89 ...kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                     +++k ++ ++ k++k  a  ++l kesrakarararertrek +++
  Cc07_g05080 199 ktaSKRKRKKtNQAKNPKMVA-LSKLVKESRAKARARARERTREKISLR 246
                  443222223213333333333.677788*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.4E-41102243IPR005333Transcription factor, TCP
PROSITE profilePS5136934.682103161IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.483225242IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MFSSGSEITH FAQLSPYLCP PSSTTSSSTS STLGLNGNNE AFLLLHHQDL LSHYLAVAPM  60
IETANTMTAP TSTKKTTTAS TTNPQISSAT PLHTRYRRKQ PAKRDRHSKI CTAQGPRDRR  120
VRLSMDIARK FFGLQDLLGY DKASQTLDWL LTKSKAAIKE LLDMKDTDHD ANAKCLCFWS  180
EAGNVVAAGT NTKEDESKKT ASKRKRKKTN QAKNPKMVAL SKLVKESRAK ARARARERTR  240
EKISLRKLSI DQKSPDLIPL SPDHTKPAAW SQIGTCKTKD SSMLGTISSL KLNASIQEDD  300
GFFCFNPRAG AIGAEEISQD TPRIIRKPKP SSILGFQRNL ILSKEASPNF DSWSLVTNGN  360
WGISSSMTSS SLCAVTNTSS TKVLQICGKP SEDKSNNNQV PCGRQIHRST *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203207RKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074668.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A068U4640.0A0A068U464_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.17e-27TCP domain protein 12