PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g20930
Common NameGSCOC_T00015845001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HB-PHD
Protein Properties Length: 703aa    MW: 79177.2 Da    PI: 10.0623
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g20930genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.33.9e-11484531653
                  S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  +f ++ +e L  +F++n  ps++ r  L+++lgL+ ++V  WF+N R+
  Cc06_g20930 484 RFPRHVVEKLRVVFAENELPSRTIRDNLSRQLGLESEKVNKWFKNARY 531
                  6778999***************************************97 PP
2HLH14.75.5e-05649681742
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKae 42 
                  e+E  R  ++++++e+L+++l  +   ps + sKa+
  Cc06_g20930 649 EAEMERLCKMKDKIEKLQQVLLRL---PSSRSSKAD 681
                  7899*******************9...999999996 PP
3PHD38.13.6e-13224278150
                  SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
          PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                  +C+ C+   +  ++++vlCd +C+ +fH+kCl+++l++e++p g   w+C+ Ck+
  Cc06_g20930 224 ICAKCKLreAFPDNDIVLCDgTCNCAFHQKCLDPPLSTENIPPGdeGWFCRYCKS 278
                  588888854455********56********************9999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.52E-15216282IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-11220280IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.22222279IPR019787Zinc finger, PHD-finger
PfamPF006282.9E-10224278IPR019787Zinc finger, PHD-finger
SMARTSM002494.2E-9224277IPR001965Zinc finger, PHD-type
PROSITE patternPS013590225276IPR019786Zinc finger, PHD-type, conserved site
CDDcd155045.72E-30225276No hitNo description
Gene3DG3DSA:1.10.10.601.3E-12472530IPR009057Homeodomain-like
PROSITE profilePS5007112.568476536IPR001356Homeobox domain
SuperFamilySSF466892.35E-10478544IPR009057Homeodomain-like
SMARTSM003893.9E-9478540IPR001356Homeobox domain
CDDcd000862.80E-8479539No hitNo description
PfamPF000461.3E-8484531IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MAGETKKRKR KGVSDSSQKE KSPKKQCSKG VKLKPKLQVK SGNSESKHMK KCFDRLGEGK  60
GNISRRKSIV KKAIMQKTKS LKKQSELKTS RKDEPEVKNS KDGGKRDSSD VGFQKANRRK  120
RRKRRKENLE LDEASRLQRR TRYLLIKVKL EQNLIDAYSA EGWKGHSREK IKPEKELERA  180
KKQILKCKLG IREAICQLDV LSSVGHIEDS AVAPDGSVHH EHIICAKCKL REAFPDNDIV  240
LCDGTCNCAF HQKCLDPPLS TENIPPGDEG WFCRYCKSKM EILEVTNAHL GTNFPLDSNW  300
QDIFKEEAAL LDGKESLLCQ EEEWPSDDSE DVDYDPEGRE FHSPNSMSGS GSDSSVDASS  360
SNSLSSIEDD VLLLSERLDK RHRVSEGNIA GVESDEATDC EVLSGPRQRK AVDYIKLHDE  420
MFGKNAVVSE QISEDEDWGP SRRKHRGKES NVESTIVTTG DKPGTSAEVK KKLSSGRSKR  480
PIFRFPRHVV EKLRVVFAEN ELPSRTIRDN LSRQLGLESE KVNKWFKNAR YLALKARKKA  540
KRLNASGPTV SKESVSRSGE DKSADPVTSE NVAIEHELES PGLKSSSRRK TAHLMASAFT  600
RKRHKTALPP TNNKTPADFG DDVCLKLLRE KVKKKKKMNI KRTVMPEAEA EMERLCKMKD  660
KIEKLQQVLL RLPSSRSSKA DAAALNELAI IYVPVAELRE KR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510KKRKRK
2117125RRKRRKRRK
3118126RKRRKRRKE
4119125KRRKRRK
5121126RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068450.10.0pathogenesis-related homeodomain protein-like
SwissprotP487851e-150PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A068V4T80.0A0A068V4T8_COFCA; Uncharacterized protein
STRINGVIT_11s0103g00650.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-140pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]