PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g17660
Common NameGSCOC_T00040349001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 261aa    MW: 29911.5 Da    PI: 7.5818
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g17660genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.2e-35221132102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++ed++++e+isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv + +         weF+++ F+kg+++ll++i+
   Cc06_g17660  22 FLLKTYMLVEDPSTDEVISWNTEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATAR---------WEFSNDMFRKGERDLLCEIR 109
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Cc06_g17660 110 RRKA 113
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3615106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.98E-3317111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5418111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-192245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMEPECEKSL LEYVRKSSPP PFLLKTYMLV EDPSTDEVIS WNTEGTAFVV WQPAEFARDL  60
LPTLFKHSNF SSFVRQLNTY GFRKVATARW EFSNDMFRKG ERDLLCEIRR RKAWTNKSHS  120
NNNKGQQNHH HHHQAAAAAA APTKDQSDED QSQRSSSTSS SSDQYTVLID ENKRLKRENG  180
VLSTELSTMK KKCKELLDLV AVYADQAGEK NDGSIVDNDE FDERPKLFGV RLEVQGEIER  240
KRKFAEISRN AQVILFQSCK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-211711115120Heat shock factor protein 1
5d5u_B6e-211711124129Heat shock factor protein 1
5d5v_B6e-211711124129Heat shock factor protein 1
5d5v_D6e-211711124129Heat shock factor protein 1
5d8k_B4e-21201113105Heat shock factor protein 2
5d8l_B4e-21201113105Heat shock factor protein 2
5d8l_D4e-21201113105Heat shock factor protein 2
5d8l_F4e-21201113105Heat shock factor protein 2
5d8l_H4e-21201113105Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7787201e-143DQ778720.1 Coffea canephora microsatellite ES8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066484.10.0heat stress transcription factor B-3-like
RefseqXP_027066561.10.0heat stress transcription factor B-3-like
SwissprotO222308e-72HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A068V0E20.0A0A068V0E2_COFCA; Uncharacterized protein
STRINGXP_008244246.11e-111(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-67heat shock transcription factor B3