PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g16960
Common NameGSCOC_T00004153001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 703aa    MW: 77122.3 Da    PI: 5.9855
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g16960genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.6e-08280300526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ GtC++Gd C +aHg
  Cc06_g16960 280 PCPDFRK-GTCRRGDMCEYAHG 300
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127967.6E-955128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0225989IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.203.1E-1759153IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.54759153IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.33E-1659152IPR020683Ankyrin repeat-containing domain
CDDcd002046.95E-1461137No hitNo description
PROSITE profilePS5008811.62194129IPR002110Ankyrin repeat
SMARTSM002480.001494126IPR002110Ankyrin repeat
SMARTSM003563.1E-6275301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911280302IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5280300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4280302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4308338IPR000571Zinc finger, CCCH-type
SMARTSM0035630310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MDMNHLTVET EDVLASVLEL AANNDMDGFK RWVEQDPTSV DEVGLWYGRQ KGSKQMVLEE  60
RTPLMVAATY GSIDVLELIL SLSEIDVNRS CGLDKSTALH CAASGGSVKA VDAVKLLLAA  120
GADPNLMDIN GHRPIDVIIV CPKFQERKLL LEKLLSTEAS LGDHRLRVST TTSNSNSNSP  180
PLSPSPGNGS PSSHSDSTSS PKISDLPASS MSEKKEYPVD PSLPDIKNSI YSTDEFRMYS  240
FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCVP CPDFRKGTCR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT SCNRRVCFFA HTQEEMRPLY VSTGSAVPSP RTGPSSTNAV  360
DFAGMNFLPG SPSSVTMMSP SPFTPPMSPS TNGIANMGWA QPNAPALHLP GSNLQSSRLR  420
SSFNARDIPT EDLNMLSEFD VQQQQFLDEI SRISQPNINS SSLNRTSRPK TMTPSNLEDL  480
FNVEGLSPRY SDQALASAVF SPTHKSAVLN QFQQQQQSML SPINTNFSPK SVDHSLLQAS  540
FGVSSSGRMS PRSMDPISPM SSRVSMLAQR EQQQQQQPQQ QFRSLSSRDL GSSSAAVVGS  600
PADTWSNWGS SMGKPDWAVS TEFGRLKRSS SFELGNEEPD LSWVQSLVRD SPQEMKEKSV  660
QYVAGAATSA EGANLDHQID QMDPSALTAL LDQMQLDHLI AQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068397.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_027068398.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_027068399.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_027068400.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A068VG460.0A0A068VG46_COFCA; Uncharacterized protein
STRINGXP_006421436.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]