PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g16230
Common NameGSCOC_T00030720001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 433aa    MW: 48094.5 Da    PI: 7.2927
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g16230genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.64e-11138171538
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 
                  k  rr+++NReAAr+sR+RKka++++Le    +L
  Cc06_g16230 138 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKL 171
                  7789***********************9754444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.0E-8131181No hitNo description
SMARTSM003388.3E-8134197IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.002136180IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.33E-7138178No hitNo description
PfamPF001702.9E-8138173IPR004827Basic-leucine zipper domain
CDDcd147083.68E-22138190No hitNo description
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
PfamPF141445.7E-33232307IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MMQSSSSAIP GNFISKDTGA YDLGELDQAL FLYLDGQEPS AIQEQRQNSG MRPPTLNIFP  60
SQPMHVDPSS AKASTGLVSN SPSSSGSKRS SEPSMELSNP RNDVASAPEP AKAVKREGNR  120
RGPTSSSEQE GPKTPDPKTL RRLAQNREAA RKSRLRKKAY VQQLESSRIK LTQLEQEIQR  180
ARSQGIYFGG AAALLGGDQS MPAPMGNISS VADATVFDME YSRWLEEHHR LMCELRNAVQ  240
EHLPENELRL FVDNCLAHYD EVMNLKSMIA KSDVFHLVSG MWKTPAERCF MWMGGFRPSE  300
LIKIIMSQIE PLTEQQLLAI CGLQQSTQEA EEALSQGLEA LNQSLSDTIA SDALSCPSNM  360
ANYMGQMALA MNKLSTLEGF VRQADNLRHQ TIHRLHQILT TRQAARCFLA IAEYFHRLRA  420
LSSLWLARPR QE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066448.10.0bZIP transcription factor TGA10-like isoform X1
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A068UPD70.0A0A068UPD7_COFCA; Uncharacterized protein
STRINGXP_009611363.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22792145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein