PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g14450 | ||||||||
Common Name | GSCOC_T00041255001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 329aa MW: 37466.6 Da PI: 8.3388 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.8 | 5.6e-13 | 43 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++ +l ++ +e Aa a++ a++k++g Cc06_g14450 43 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQDYLRAYDDEEAAAHAYDLAALKYWG 102 57*******************999955656446*************************98 PP | |||||||
2 | AP2 | 52.4 | 1.3e-16 | 145 | 196 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Cc06_g14450 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 196 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-15 | 43 | 111 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-9 | 43 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.755 | 44 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-21 | 44 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-13 | 44 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 45 | 56 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-18 | 145 | 206 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.0E-12 | 145 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.95E-24 | 145 | 206 | No hit | No description |
PROSITE profile | PS51032 | 18.189 | 146 | 204 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-25 | 146 | 210 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 146 | 205 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 186 | 206 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:1904278 | Biological Process | positive regulation of wax biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MTKISQQNQR NNSNLGNGIN NSAIKVKRTR KTVPRDSPPQ RSSIYRGVTR HRWTGRYEAH 60 LWDKNCWNES QNKKGRQDYL RAYDDEEAAA HAYDLAALKY WGQDTTLNFP LATYQKELKE 120 MEGQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ 180 EEAAIAYDMA AIEYRGLNAV TNFDLSRYIK WLRPNATNST TTSAAIAEPN PNVDTNFMPT 240 PDQMLASSSI YHPQTEQQPQ PLDITTDITL NQSRPASATS ALGFIPDDAQ SFFTTPDMGS 300 YIDQSQEDIF SELINPFMQP MLQFDFDV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027065220.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g79700 | ||||
Swissprot | Q94AN4 | 1e-103 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A068U5G0 | 0.0 | A0A068U5G0_COFCA; Uncharacterized protein | ||||
STRING | XP_009793520.1 | 1e-151 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1815 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 1e-97 | AP2 family protein |
Publications ? help Back to Top | |||
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