PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g13190 | ||||||||
Common Name | GSCOC_T00041433001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 508aa MW: 54741 Da PI: 8.2181 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.1 | 3.4e-11 | 148 | 205 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pse.ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d + g ++ r + ++ +e+Aa+a++ a++k++g Cc06_g13190 148 IFRGVTRHRWTGRYEAHLWDnTCRrEGqsRKGRQGICGYDKEEKAARAYDLAALKYWG 205 69******************6555544765566677779999**************98 PP | |||||||
2 | AP2 | 47.3 | 5.3e-15 | 248 | 299 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Cc06_g13190 248 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 299 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.53E-13 | 147 | 215 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.45E-17 | 147 | 215 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.0E-12 | 148 | 214 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-20 | 148 | 219 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.397 | 148 | 213 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-8 | 148 | 205 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-6 | 149 | 160 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.09E-25 | 248 | 309 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-18 | 248 | 309 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.5E-10 | 248 | 299 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-18 | 249 | 307 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-34 | 249 | 313 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 249 | 307 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-6 | 289 | 309 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MDSSHPNWLA FSLSNHPLFE AFNSLTSSSG AVVRAEEDNG NNGASVTAAA DLSTVLNCSS 60 PKLEDFLGGG SNGSCSSADV CQFGGGNQTS ALINADVYDS ELKSIAASFL RGYSTEQAES 120 QKQLAAVPLA PEPPAKKAVE TFGQRTSIFR GVTRHRWTGR YEAHLWDNTC RREGQSRKGR 180 QGICGYDKEE KAARAYDLAA LKYWGPTTTT NFPVSNYEKE LEEMKHMTRQ EFVASLRRKS 240 SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL 300 NAVTNFDISR YDVKSIASSN LPVGGISNNK SNNNNKTSSD SLSDNKSADG SNRSDDRDHS 360 SATSVSFVSQ PSTSALGFGL PIKQNTPSTS DFWSSLGYHN NNVTAKIPTP TAIPLFQNPM 420 YFQQQHQHQQ SNVLGGGGGN GNGTGTNSSS PSEQVPFVTR IALSSSNGTG STYDAANFGN 480 WISPTLHSFQ PAKPNLSVFQ TPIFGME* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027068737.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-149 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A068U4A0 | 0.0 | A0A068U4A0_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_004734m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-133 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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