PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g11380
Common NameGSCOC_T00041666001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 319aa    MW: 35261.3 Da    PI: 9.51
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g11380genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.73.7e-19182215134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C+ C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Cc06_g11380 182 CADCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 215
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.716176212IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-18176227IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-12176216No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15180215IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.99E-13181213No hitNo description
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
PfamPF003207.6E-17182215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MIPNYLTSAS PSPFSVRDPI QDHDEHDRPQ LFFPNYQTAS SSSVSSSGFR SIALDQTEDY  60
HAQMHQQEYQ QQVENHAPYT GSQDPEKKAN KGSKISLWKN NTNGNQADDH EEINPVNNKW  120
VSSKVKLMQK MNKPDLKEIT SSTTTTMKFE DHQKQPTSAS PEADNFSSNS SSNISNTPIR  180
VCADCNTTKT PLWRSGPKGP KSLCNACGIR QRKARRAMAA AAAAANGTSP PTYDTTAPLK  240
VKVQNKDKLK NNGQFKKRCK LNTSAESSQN LHAVQKKSGF EDFLFNLSKN LAFHRVFPQD  300
EKEAAILLMA LSCGLVHG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065531.10.0GATA transcription factor 21-like
TrEMBLA0A068U3P20.0A0A068U3P2_COFCA; Uncharacterized protein
STRINGVIT_11s0016g02210.t017e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.17e-36cytokinin-responsive gata factor 1