PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g11170
Common NameGSCOC_T00041690001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HRT-like
Protein Properties Length: 684aa    MW: 74899.9 Da    PI: 9.6568
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g11170genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like51.12.3e-16290320131
     HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                  iCGv+l++G vCkr P++g+KRC eHKGm++
  Cc06_g11170 290 ICGVALGHGVVCKRAPAEGNKRCTEHKGMKV 320
                  8****************************97 PP
2HRT-like51.71.5e-16350379231
     HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                  CGvil+dGs+C+ +Pv+g+KRC eHKG++i
  Cc06_g11170 350 CGVILDDGSCCTSKPVQGNKRCLEHKGRKI 379
                  ***************************997 PP
3HRT-like58.11.4e-18417447131
     HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                  iCGv l+dG++C+rqP  gRKRCeeHKG+Ri
  Cc06_g11170 417 ICGVDLDDGTFCTRQPPAGRKRCEEHKGKRI 447
                  8*****************************7 PP
4HRT-like512.4e-16493522231
     HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                  CG+++ dGs C+r+P +g+KRC++HKGmR+
  Cc06_g11170 493 CGAATHDGSLCSRKPTEGNKRCWQHKGMRV 522
                  *****************************7 PP
5HRT-like40.16.2e-13551580130
     HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                  +CG++l++Gs C+r+P  g+KRC +H G+R
  Cc06_g11170 551 TCGAALQNGSHCSRKPTNGNKRCSQHEGRR 580
                  7***************************99 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MESGERAPPS IILSVEAREK SVTALATISS SSRLKREDCR RTKHDSAFSP WKVLIGPSDW  60
EDHSNGKEGA ERYRTQNLPN CTSCTGVYEL GTAVWRSKSR RDAGKLDPDF IIPVYLGKSD  120
NVRNRLQQYG REGAHLENGS SNTKLNGCNG SLAQTGSGLF KDIFSEGFSI VYRWAPMKST  180
RDADKTESDL LGKFDYAWNK GSNGPRRHND ILKMLDRISK TSPFMAKLQV LSQRKKGIKI  240
KAYKPPFVEN GLDFYTSLET NGLLAQIFKF GRSQPRLIVR SVINENYISI CGVALGHGVV  300
CKRAPAEGNK RCTEHKGMKV NGFTSKLLKD GKSTLVANEY PINKTFTPPC GVILDDGSCC  360
TSKPVQGNKR CLEHKGRKIN NFPQLVNDKK ANYVYGPVLD YNTSLSKAGH TDSSSTICGV  420
DLDDGTFCTR QPPAGRKRCE EHKGKRIKET ICISHRDEIP SSFIPSGPKI GIQESQNHSL  480
IPSVFCGKTS PACGAATHDG SLCSRKPTEG NKRCWQHKGM RVDASPTSSS CNNSRRSSTS  540
LQYASEDFTS TCGAALQNGS HCSRKPTNGN KRCSQHEGRR ADLSPRSSND FRYYANPFSY  600
ASHGSAYETF SSTCGAPTLG GSYCRRSTAG GRCWQHEGYA NSYSYASYGS AYGNFSSTCG  660
APTRSGSYCR RSTAGGRCWQ HGG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068387.10.0protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1
TrEMBLA0A068U3Z60.0A0A068U3Z6_COFCA; Uncharacterized protein
STRINGXP_009593858.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77412330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-99effector of transcription2