PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g08310 | ||||||||
Common Name | GSCOC_T00031148001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | YABBY | ||||||||
Protein Properties | Length: 195aa MW: 21772.7 Da PI: 8.5813 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 209.6 | 1.1e-64 | 11 | 167 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse..kl 101 +eq+Cy+ CnfCn +lavsvP +slf vvtvrCGhCt+l svn+a a q l+++s + ++++++ + ++++ ++ + + ++++ ++ Cc06_g08310 11 PPEQLCYIPCNFCNIVLAVSVPCSSLFDVVTVRCGHCTNLWSVNMAAAFQSLSSSSCWQ-----DVQAQNSTPPDQYRIDFGSSAKGYNIKPATrpSI 103 689*************************************************9999633.....3333333334444444333333333333320023 PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +e v+rPPekrqrvPsayn+fikeeiqrika+nPdi hreafs+aaknWahfP+ihfgl Cc06_g08310 104 PNRAEER-----IVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDINHREAFSTAAKNWAHFPHIHFGL 167 3333333.....379****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.2E-70 | 11 | 167 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.5E-8 | 106 | 160 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.0E-4 | 121 | 159 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSSCSDVSPP PPEQLCYIPC NFCNIVLAVS VPCSSLFDVV TVRCGHCTNL WSVNMAAAFQ 60 SLSSSSCWQD VQAQNSTPPD QYRIDFGSSA KGYNIKPATR PSIPNRAEER IVNRPPEKRQ 120 RVPSAYNQFI KEEIQRIKAN NPDINHREAF STAAKNWAHF PHIHFGLMLE TNNKPKLGED 180 SEKRLTPRTA LLNK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027066017.1 | 1e-144 | axial regulator YABBY 5-like | ||||
Refseq | XP_027175450.1 | 1e-144 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 1e-81 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A068UPF7 | 1e-143 | A0A068UPF7_COFCA; Uncharacterized protein | ||||
STRING | VIT_11s0016g05590.t01 | 1e-104 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-84 | YABBY family protein |
Publications ? help Back to Top | |||
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