PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g07410
Common NameGSCOC_T00031264001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 318aa    MW: 36131.2 Da    PI: 6.4624
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g07410genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072562882254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp++e++++L +++gL+ +q+ +WF N+R +
  Cc06_g07410 256 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 288
                  58*****************************87 PP
2ELK29.31.9e-10209230122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  Cc06_g07410 209 ELKHELKQGYKEKIVDIREEIL 230
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-193983IPR005540KNOX1
PfamPF037902.2E-174182IPR005540KNOX1
SMARTSM012564.1E-2597152IPR005541KNOX2
PfamPF037912.3E-18102151IPR005541KNOX2
PfamPF037896.9E-7209230IPR005539ELK domain
PROSITE profilePS512139.969209229IPR005539ELK domain
SMARTSM011886.1E-4209230IPR005539ELK domain
PROSITE profilePS5007111.71229292IPR001356Homeobox domain
SMARTSM003891.7E-10231296IPR001356Homeobox domain
SuperFamilySSF466894.71E-16231295IPR009057Homeodomain-like
CDDcd000869.98E-11232291No hitNo description
Gene3DG3DSA:1.10.10.606.6E-25236293IPR009057Homeodomain-like
PfamPF059208.0E-18249288IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVHKRLKDNH AHGAADHNNN NGSDHQAPEV VVNDEWEKDK CKAEILNHPL YDQLLSAHVS  60
CLRIATPVDQ LPRIDAQLAQ SQHVVAKYSS VLRGHDPHQQ ALDDKDLDHF MTHYVLLLSS  120
FKEQLQQHVR VHAMEAVMAC WELEQSLQSL TGVAPSEGTG ATMSDDDDDQ ADSDTNLFEG  180
SLDGQDSMGF GPLTPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL RKRRAGKLPG  240
DTTSLLKSWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSSSSSQ  300
KSKRKSAGEK SSNEQFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12232297873Homeobox protein PKNOX1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066653.10.0homeobox protein knotted-1-like 11 isoform X2
SwissprotP480001e-168KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A068UPN60.0A0A068UPN6_COFCA; Uncharacterized protein
STRINGVIT_04s0008g06130.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-151KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]